RNA id: TU278752


Basic Information

Item Value
RNA id TU278752
length 474
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G205456
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 14292046 ~ 14292683 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcactccgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggccccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagtgggccaactttcattctatttctaaaatacctcgcgggccgctccaaaaaaggaaacgggccgcaaatggcccgcgggccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278743 lncRNA downstream 61440 14230325 ~ 14230606 (-) True G205448
TU278687 lncRNA downstream 241484 13942723 ~ 14050562 (-) False LOC103033354
TU278690 lncRNA downstream 296586 13992753 ~ 13995460 (-) True G205401
TU278713 lncRNA downstream 300393 13985830 ~ 13991653 (-) True G205423
TU278693 lncRNA downstream 373673 13912597 ~ 13918373 (-) False LOC103033675
TU278755 lncRNA upstream 16642 14309325 ~ 14309690 (-) True G205459
TU278759 lncRNA upstream 45595 14338278 ~ 14346427 (-) True G205462
TU278786 lncRNA upstream 456704 14749387 ~ 14768117 (-) True G205489
TU278802 lncRNA upstream 659101 14951784 ~ 14952540 (-) True G205505
TU278803 lncRNA upstream 660083 14952766 ~ 14953166 (-) True G205506
XM_007236465.3 mRNA downstream 291929 13998047 ~ 14000117 (-) True LOC103033354
XM_007236471.3 mRNA downstream 313610 13974677 ~ 13978436 (-) False LOC103035169
XM_007236470.3 mRNA downstream 319017 13941252 ~ 13973029 (-) True btk
XM_022683634.1 mRNA downstream 361134 13928962 ~ 13930912 (-) True timm8a
XM_022684326.1 mRNA downstream 373661 13902203 ~ 13918385 (-) True LOC103033675
XM_022683649.1 mRNA upstream 1117493 15410176 ~ 15567635 (-) False pcdh19
XM_007248791.3 mRNA upstream 1117493 15410176 ~ 15567635 (-) False pcdh19
XM_022683648.1 mRNA upstream 1117493 15410176 ~ 15567635 (-) False pcdh19
XM_015605691.2 mRNA upstream 1117493 15410176 ~ 15567635 (-) True pcdh19
XM_022684348.1 mRNA upstream 1734034 16026717 ~ 16027163 (-) True LOC111195849
TU278710 other downstream 313596 13974677 ~ 13978450 (-) True LOC103035169
TU278646 other downstream 514425 13773317 ~ 13777621 (-) True G205375
TU278618 other downstream 552125 13733713 ~ 13739921 (-) True LOC111195729
TU277652 other downstream 2707972 11583200 ~ 11584074 (-) True G204671
TU277526 other downstream 3647359 10644254 ~ 10644687 (-) True G204584
TU278963 other upstream 1251234 15543917 ~ 15545622 (-) True G205640
TU278995 other upstream 1538967 15831650 ~ 15832094 (-) True G205670
trnae-uuc_23 other upstream 1850605 16143288 ~ 16143359 (-) True trnae-uuc_23
XR_002651770.1 other upstream 1911254 16203937 ~ 16365644 (-) False drp2
trnav-uac_1 other upstream 2333560 16626243 ~ 16626315 (-) True trnav-uac_1

Expression Profile