RNA id: TU278806


Basic Information

Item Value
RNA id TU278806
length 522
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G205509
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 14955488 ~ 14956034 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACACCGGTTTTAAacagagcagagagcagcttcttTTGTGCGACGCTGGAAAAACAGTCTAAGGGCCTTTTTAATTAGAAAAGCAAATCACTGCTCACCGCCTCCTGAAGACGGCGTGGAGTTCGGTGAGGGGCCGGACCTTCTGCTGCAACGCCGACCGTCTCGGTAccaaataaaatgctaaaaatactgaaatactaaGATTTTATAGAAGGTTTGCTGGAGTCTTTAGAGCCTGAAGTTAGAGATGGTGTAAAGAGCATCCTTTactttgttttattcttatttagatTAACGAAGACTATAGAATAATGGGCTGCGACGATTGGTTGATGTAATCAACAAGTTTTTAGGCGTACATTTAATCATTAATATGGGTTACACTGTGTATTGTAGATAGAGATGCACAAAAACCAACAATATGAAACACTGGGTAAAAGGCTGAATGTTGAAAACTATATACATTTTCCAACAGATTTTTATTCGTTTTGCTATTTCTTATAACTAATTCATAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278803 lncRNA downstream 2322 14952766 ~ 14953166 (-) True G205506
TU278802 lncRNA downstream 2948 14951784 ~ 14952540 (-) True G205505
TU278786 lncRNA downstream 187371 14749387 ~ 14768117 (-) True G205489
TU278759 lncRNA downstream 609061 14338278 ~ 14346427 (-) True G205462
TU278755 lncRNA downstream 645798 14309325 ~ 14309690 (-) True G205459
TU278818 lncRNA upstream 110038 15066072 ~ 15066282 (-) True G205521
TU278824 lncRNA upstream 151495 15107529 ~ 15114594 (-) True LOC111195866
TU278826 lncRNA upstream 151495 15107529 ~ 15115381 (-) False LOC111195866
XR_002651870.1 lncRNA upstream 151577 15107611 ~ 15114634 (-) False LOC111195866
XR_002651869.1 lncRNA upstream 151577 15107611 ~ 15114633 (-) False LOC111195866
XM_007236465.3 mRNA downstream 955371 13998047 ~ 14000117 (-) True LOC103033354
XM_007236471.3 mRNA downstream 977052 13974677 ~ 13978436 (-) False LOC103035169
XM_007236470.3 mRNA downstream 982459 13941252 ~ 13973029 (-) True btk
XM_022683634.1 mRNA downstream 1024576 13928962 ~ 13930912 (-) True timm8a
XM_022684326.1 mRNA downstream 1037103 13902203 ~ 13918385 (-) True LOC103033675
XM_022683649.1 mRNA upstream 454142 15410176 ~ 15567635 (-) False pcdh19
XM_007248791.3 mRNA upstream 454142 15410176 ~ 15567635 (-) False pcdh19
XM_022683648.1 mRNA upstream 454142 15410176 ~ 15567635 (-) False pcdh19
XM_015605691.2 mRNA upstream 454142 15410176 ~ 15567635 (-) True pcdh19
XM_022684348.1 mRNA upstream 1070683 16026717 ~ 16027163 (-) True LOC111195849
TU278710 other downstream 977038 13974677 ~ 13978450 (-) True LOC103035169
TU278646 other downstream 1177867 13773317 ~ 13777621 (-) True G205375
TU278618 other downstream 1215567 13733713 ~ 13739921 (-) True LOC111195729
TU277652 other downstream 3371414 11583200 ~ 11584074 (-) True G204671
TU277526 other downstream 4310801 10644254 ~ 10644687 (-) True G204584
TU278963 other upstream 587883 15543917 ~ 15545622 (-) True G205640
TU278995 other upstream 875616 15831650 ~ 15832094 (-) True G205670
trnae-uuc_23 other upstream 1187254 16143288 ~ 16143359 (-) True trnae-uuc_23
XR_002651770.1 other upstream 1247903 16203937 ~ 16365644 (-) False drp2
trnav-uac_1 other upstream 1670209 16626243 ~ 16626315 (-) True trnav-uac_1

Expression Profile