RNA id: TU280571


Basic Information

Item Value
RNA id TU280571
length 266
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G206782
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20074425 ~ 20074690 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcacatgctgcacgttgatacctgtataaacgcctccttcttcaccaacaacaaaaaccctcatattagagagaggagagactcgtagctttataaagggaaatggatgagttagcagctcatatgtggagcatcttttgctggagtggagaaacagtaaacagctgctctgaagttcatgctcaggtccaggaggtgaaaaaaggccaggtggtttgcttttgctgttttttgcagctatagctgcacagctgcaccaagagat

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280560 lncRNA downstream 79623 19925031 ~ 19994802 (-) False LOC103046671
TU280552 lncRNA downstream 106703 19957477 ~ 19967722 (-) False LOC103046056
TU280559 lncRNA downstream 123318 19925031 ~ 19951107 (-) True LOC103046671
TU280546 lncRNA downstream 222464 19814974 ~ 19851961 (-) True G206763
TU280436 lncRNA downstream 393215 19601599 ~ 19681210 (-) True G206685
TU280575 lncRNA upstream 11487 20086177 ~ 20086493 (-) True G206784
TU280586 lncRNA upstream 32407 20107097 ~ 20193718 (-) False LOC103040644
TU280583 lncRNA upstream 115347 20190037 ~ 20193718 (-) False LOC103040644
TU280584 lncRNA upstream 115347 20190037 ~ 20274905 (-) False LOC103040644
TU280585 lncRNA upstream 115347 20190037 ~ 20196861 (-) False LOC103040644
XM_007228407.3 mRNA downstream 96567 19968907 ~ 19977858 (-) True prps1
XM_022683727.1 mRNA downstream 97769 19968907 ~ 19976656 (-) False prps1
XM_007228408.2 mRNA downstream 106394 19964254 ~ 19968031 (-) True LOC103046056
XM_007228409.3 mRNA downstream 118846 19952166 ~ 19955579 (-) True LOC103046360
XM_015601829.2 mRNA downstream 123308 19942842 ~ 19951117 (-) False LOC103046671
XM_007228405.3 mRNA upstream 2830 20077520 ~ 20084460 (-) True LOC103045046
XM_007228404.3 mRNA upstream 24809 20099499 ~ 20104840 (-) True vamp7
XM_022683730.1 mRNA upstream 48457 20123147 ~ 20134840 (-) True LOC103043510
XM_007228400.3 mRNA upstream 50990 20125680 ~ 20141059 (-) False LOC103043510
XM_022683731.1 mRNA upstream 105620 20180310 ~ 20188753 (-) True LOC103043211
TU280287 other downstream 1235509 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 2032512 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 2773468 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3443374 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3444858 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 389013 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 389013 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 389013 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2835354 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2835983 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile