RNA id: TU280583


Basic Information

Item Value
RNA id TU280583
length 3652
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id LOC103040644
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20107097 ~ 20274905 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAATATCCAAGTAAATATgaaatttgttttgatttagGTATAGGCTACAGTGTTCATAAATGagcaaaaaaacaccaaatcacCATTTTTCCAGTTTTCAACATAATATGAATCTGACAATTCTGAACAATgatttattcataaaataaaaatgaaatatccattaataaataattcattaagaTATTGAAACACTAATTGTCATCCTTTTAGAAGTGAAGGCTAATACAATAGGAcacttttacaaaataatttctatAATCGAATTATCTTTGTTATAGAAATTATTGTGAATTATCTTGTAAAATCGTTTAGAAATGTGTGCTCTTTCAAGGTTGGCGGTCAAGGTCTGCATTGTCCATGATGAAAGGACGAATAGAAATTATCCAGAACTAAATCAAcccctgttttctgtcttttgtgGCCATTTTGGTGCAAGATTTTTTGTCAGACAGCAATGAAATACATAGCTATATATGGCTATTTGAGgcatatagatataaatatcaGACATTTTCTTATATGTAGAAGCTGATCCGTAAACATCCGTGTATATTCTGCTTTTTTCGACTTAATTTAATACATCAAATATCAGTTTCAaaaatcagttaaataaaatttacagaaaaaaatcatcattCCTAGTTTGGTGCAACCCTGCATTTGGGTTAAGGTGGAGAAAGAGGTCATTTTTGCTAagctttgctttttaaaaaatataaacatatttttattggtttatttgttaACACCAACCTGCCATTCTTCATTTTTTAACCAGATATAAAACACTGCAGATGTGccataaaatataatgtaaagtgCATGCTCTAGACTATGAGCTATGAGCTATGAGCAGCAGgttattaattcattttcattcattgtcTTCTGATatcatatgACGCTCTTTATATGTAGCTAAGGAGGTGAGATCAAGTTTAAAGTGgaaatttaataatattttattattttttatctcataTCCTTCCTTTAATCTCATAGACGTTATTAATAGTGCTTTTGTTAACACTAGAGGGTAATAAATAGTGCTGAATGTAATGGGCCCGGAGTGAAGTGCCTCTTCTGAACAGGGGTCGTATATATTTGGAGTATGTTAGCTGGAATCcatgccttttaaatcttatCGACTGTAATAAAATCTGCAGTGTGGAGCTGATGCTAGATCCACACTCTTTAACCTGTGAggatgtgtgtttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcaggcCTTCTTTCTAGCTCATTTTTAACTGACCGTagtgtttgcttgttttattttattctattttattttatttaaagctgcttctgtctgtttttttttaggtgaaggagaaaAGCTGcttaaactgtttaaatttctttgtttgttttttttttttcaaatcttgAACTGTATTGAACTGGTTGTTTTTCATACCTCTTTTCATGGTGCAAAAGCCTTTCTAGACTGACTCGTTGTCTCATTTCTACATCCAACCAGAGCCAAACCCAAATGCAACTTTAGGAAATAATACGTTTCAGAACTACAGATCTTACTTCTTCTTTAATAATGATCTATATGCTTTATATCAAATCACATAACTGCAGAAGATGTATCTCTTTCAGTGTATCTGACATAttgaatgttttatgttttgtaacTAATCAAAGTCTAGAATTATCTCAATTTTTCTAGCTGATCTTGCTGATCTAGAACactaaatattgtattttctttattttttatcatgccaagaaaggaaaaagaaagacagatgaGATATGATGACAATTGAGATACAGCATGTTATCACACCCTATCAGAGCTGGTCCAGGGTCAGCTTATAAaactgtatatgtttgtgttaaAGGAGTACGACATgcaaaatctgtattttaatgCAATGCGATTCCTGACTTTGTAACTGGTTTGGAGAAAGATGAGACTTATGAGTCTTATCTTAGAAAACAGCCCTGAAAGTTCTGTTTATCAGTAGTTATATACAGTAactagttttatattattatatagttatatagccTTAGAATTTGTGTTTTTCAGAGTAAATCATATGATCGTGCATGATTGCATGAAGTGACGCTAGTTTGGAATACTGTGCTAAATCTGTGCTAGACACCTGAAGagggtatttaaaaaaaatatatatatatatatatatattttggtattatttactcagaaaaacacaaattcTCGAATAAATTCAAATTCTGTTAATACAAAACCTTATGTTATATGCCTTTATCCCAATTATGCAATGAACACACATGTGTGGTGAGCAGTAAGGGTTAATATCTTTTTGCTTCAGTGCCCAGAAATGGAAGTTTGATAAACTTAAACCTATTGAAACCACAACCTGGTCATCAGTAACCAATCACAATTGTTGTAGAAACATAATTCCATTTCTGGGGACTTTAGAATTGCTTATTAAAGTATGGATTTTGCATTCAGACACTAATTTCTGGCTCCATTCTTGTGGTGCACCTGATACAATATGTGCAGCACATGTAGCCCATGGAGCTACAACATCTTGATACATATGTAGGCCATGGTGCTAAACTGTTTGATGCATCTGTAGTCCATGGTACATTAACCTGGACCATGATCTTGATACATTATTTCTcataaaagagaagaaaagacatTTATCATAGACAGAAATGGACAATTGAAATGGAGTTGATTACTTCTGTTATAAGCCAACTTTGGCTTATCagcttttctgttcttttactaaatacagGGAATCgcattaagactttttttttttttggagaccATATGGTACAGATGCACCTGAAACATGTTCGTCTATTCCTTTAACACTGGCCAGTAACAAGTTCTCCTCGTATAAGTACTTAAGCCAGTGTACTAAGACTCTACTAACAGTTTAAAACTTCTTCTGAGGCCAAGACTAGACCCTGTTTATGCCAAATGAATGGAGGCGTGCTTTATATTTCAGTGTAAGCTACTGTTTCTGCTCtcgtttttatttgtattttttccgtTTCCTGGATATGTAACCAAAGCCAGTGGAAAGACTGTTACCAGGCACCGAGGTTACTGTGCTCATGCTGTTTTCCTCTCATTTCAGTCAGTTTAAAACGTTTCATCAGTTCAGAACAATGACCGTCATAAACCATACAAAAGCCATAAAGAGGAGGCTGGGATCTCTGTGGTCTCTCTGTGGCTAGCTGCTAAAAACAAGTCACACTAAAAATCAATTGTAACAAACGTgtcatgattttttattttttattttttttcatactgtaGGTCCCTAAACTAACTGCCTAGCTAGTGTctaagtgtgtttgtgtcttgTGAAAATTAGGGAAATAGATTGGCTACATGGACAAATGCATTCAATAGCCGTTACTGTATGCCTGCCTATACATGTAATCATTTTATGTCAATCTATCTTAGCTCCAGATTTTACCTTTTGTCATGCCAGTATTTTTAGACCACACTTTTTGAtactgaacattttattttgaaatacaaaaatattatacattccaaaaaagatttatttatctgcatcgtttttatttcttcttattttaaaaCTCACATTAAAAGACTGCCATGTACTATATGTCATAACTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280575 lncRNA downstream 103544 20086177 ~ 20086493 (-) True G206784
TU280571 lncRNA downstream 115347 20074425 ~ 20074690 (-) True G206782
TU280560 lncRNA downstream 195235 19925031 ~ 19994802 (-) False LOC103046671
TU280552 lncRNA downstream 222315 19957477 ~ 19967722 (-) False LOC103046056
TU280559 lncRNA downstream 238930 19925031 ~ 19951107 (-) True LOC103046671
TU280668 lncRNA upstream 171196 20364914 ~ 20372471 (-) True G206843
TU280670 lncRNA upstream 171196 20364914 ~ 20372471 (-) False G206843
TU280666 lncRNA upstream 177170 20370888 ~ 20372471 (-) False G206843
TU280669 lncRNA upstream 177170 20370888 ~ 20372471 (-) False G206843
TU280685 lncRNA upstream 224598 20418316 ~ 20418553 (-) True G206856
XM_022683731.1 mRNA downstream 1284 20180310 ~ 20188753 (-) True LOC103043211
XM_007228400.3 mRNA downstream 48978 20125680 ~ 20141059 (-) False LOC103043510
XM_022683730.1 mRNA downstream 55197 20123147 ~ 20134840 (-) True LOC103043510
XM_007228404.3 mRNA downstream 85197 20099499 ~ 20104840 (-) True vamp7
XM_007228405.3 mRNA downstream 105577 20077520 ~ 20084460 (-) True LOC103045046
XM_022683733.1 mRNA upstream 2921 20196639 ~ 20238734 (-) False LOC103040644
XM_022683732.1 mRNA upstream 2921 20196639 ~ 20238734 (-) True LOC103040644
XM_007228398.2 mRNA upstream 46149 20239867 ~ 20244489 (-) True cysltr1
XM_022683735.1 mRNA upstream 179168 20372886 ~ 20382010 (-) True itm2a
XM_022683736.1 mRNA upstream 239807 20433525 ~ 20441496 (-) True LOC103041461
TU280287 other downstream 1351121 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 2148124 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 2889080 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3558986 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3560470 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 269985 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 269985 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 269985 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2716326 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2716955 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile