RNA id: XM_022683733.1


Basic Information

Item Value
RNA id XM_022683733.1
length 4147
RNA type mRNA
GC content 0.58
exon number 26
gene id LOC103040644
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20107097 ~ 20274905 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCGCTGTGGCGCGCGCGGCCTGCGCTGCTCGGGAATGTGCTCCGCACTGCGCATGCTCCCGCAGAGCCCGGTGCACAGCGATGCTGTGGGAGCTGGGCATTCCCCTCAGTCCGAGCCCAGCACAGGCAGCGGCGCGCGCGGACGGACGGACGGGCGGGCGGGAGGACCGGGGCTCCGGGAGGCGGATTACAGAGAAAATCACTGATTCTTTTTCTCCACAGCCCAGAGTCACATGAGAGCTCCGCCGCTCCGCTCCGGCAGTTTTCTGGAGTTGCCATCAATGAAAGCTGTCTTCAGCTATGATGACCGATCAGCACCTCCCACTTCTGGAGGCCACGCCCATGCTGGCTGATGTGCCTTTCCTCCCTCCAATGATCAATGGAGACAGCATGCAGCAGATGATCTTAGTGCAGGTGAATCCAGGGGAAACCTTCACTATCCGTACAGAAGATGGGCACTTTCAATGCATTACAGGTCCAGCACAAGTGCCCATGGTCTCCCCAAATGGCACCATGCCCCCCATTTTTATTCCTCCAGGTTATGTTTCTCAGgtggtggaggagaatggcATGCGTAAAGTGCTGGTTTTACCCCATACTGTGGAGTTTCACCCATCTCTACCGCCTGTACCTCCACATCTCCCCCTCTACACCCCTCCGCACCCGACCATGCTGCACCACCCGCACGTCTTCCCCACAGAACTCCCTCACTACGTCCACCAGCTGCCAGCTCTGCCCATCTACACTGAGCAGgACATGATGTGTCACAGCATGTCGATGCCCATCCATGAAGAACGATCGGTGAAAATGCAGGAGCAGCTGCAGCGGAGGCTGAAGGGCAGTTATCTGGGCACTGCCAACGGAGTACCCCTCCCTCACAGCCCCCCCGGACCTTTTATTAAGGGGGGGCAGGTCGCCATGCTTAATGGAAACAGCAAGGGCCGGACAGGCTCGGCCGCGTCTCCCACACCCCCTCGACTCAAACACTCTGGCCGGACCAGAGCCTCTCCCACATCGAGCTATGACGCTAAAGACCCGGAGGAGGAAGTGAGGCGGGTGCAGGAGCTGCTGTCGGCCGTATGCAAACCATCTGTGGGCAGTGTCACGTCTCGCTCAGCTGTCCTCTCCTGGCGTCCTCCACTCCCCATACCgtcagagacagacacacactcacacacacacacacactcacacactgcccTGCTGCTCAGCTACGAGCTGGCCTTGTCCCCGAGCGGCACGGAGGGAGATTTCAAGCTTGTGTACCAAGGGAAGGACACTAGATGTACAGTGGGAGACCTCAGGCCTGCTACGAACTACTACGCCAGGGTCTGTGTGGCGTGTAGCTCAGTGAAGGGAGCCCAGTCCGATACTGTAGCTTTCACTACGCTGCCCGGCGCTCCAGACGCTCCTGCAGCTCCTCGACTTCTCCAGAGAACCAAGAGCTCCATAAGTCTGCAGTGGAGGtcaccCAATGACAATGGCTCCAAAATCACTGGCTTTTGCCTGGAATATCATGAGGGAAAACAAAGTGCATTTAAGGAGGTTTACAGTGGCCTTGCCAAGCAGTACAAAGTCATGCGACTCATGCCTTCAACAAAATATGCCTTCAGACTTGCTGCTAAAAACGATGTAGGAATGAGTGCCTTCAGTAGTGTTGTGAGCTGCTGCACGGCGAGCTGCTCTGCCGCTCCTCCTGCACCGCCGGCTCCCCCTCGGTTAACGGAGGCCGGAGTGACGTGGCTGAGTCTGGAGTGGAGCGCCCCCTGTGGGTCGGCTGGGCGAGACACACTTGTGTACATATTGGAGGTGGAAGAGAAGGGACTGggCTGCGGCTTTCAGCTGAAGCACAGAGGAGAGGAGCAGTCGTGTACAGTGAAGGAGCTCAAGAGATTCACCTCCTACCAGTTCAGGGTTCTGGCGACTGATACAGAAGGCACTAGCCAGCCCAGCGGAGTGGTGGAGTACAGGACCCTGCCGGACCAACCTGGCAACCCGGGCAAACCGTCTCTGTGCCGCCCTGCACAGCCGCACAGCCTGCATGTTATCTGGGAGGCACCAGAAGATGATGGAGGCTCGCCAATCACTCTGTATGTTCTGGAAATCAGTCACACTGatgggCAGTGGGATGTTGTGTACAGTGGTCCTCTCAGGcagcatgtgtgtgagtgtttgctGGAGGGGACGTGGTACAGTCTCCGAGTGCACTGCCGGAGTTTAGGAGGGCAGAGTCAGGTCTCAGAGATCCTCTCGGTTGAGACTCCAGCTCTGCCTCCGGGACCGTGTGAAGCGTTACGGACTGCAGGAGACGCCACGCCCTCAGAGATTCCCCTGTGCTGGGACCCTCCAGTGTGTGATGGTGGTGCAGCAGTGTCTCAGTACTGTGTGGAAATGGCCCAGTCAGAGGAGGAGGATCAGCAGGAGGTGTTCTGTGGTTCTGATTCTCGCTGTACTGTTAACCAGCTGCTGCCTGGAAGAACGTACCTTTTCTGGGTGAAGGCGTTCAACACAGCCGGGTGGGGTCCTCTGTCAGAAAAGTGCCAGGCCTCCACAGCAGCCGGACCTCCAGAGCAGTGCCGTGCTCCAGAACTCACACTGAAGACTTCCAGCAGTGTGCTGGCTTCCTGGCAGGTCCCGGTGTGTAACGGAGCCGAGGTGTGTGAGTTCAGGATGGAATGGGGGCTTGAGGAGGGGTCTCTCGAGTTGCTGTACTGCGGCCCCTCGTCTCAGTACGAAGTGAACGATTTGCGGCCAGCTACAGAATACCGCTGCAGAGTGCAGGCAGTCAGTGATGTCGGGGCAGGCCTCTTCAGCGATGTCGCCATGGTAACGACACCAGCCTCAGTACCGGCTGCTGTGGAGCATGTTGAGGAGATGAGGGCGGAGCCTCTGGATGATGTAATGCCTCGCAGCTCTGCTACCACTCTGGCCTTGCGGTGGAAGGAGCCTCGTTGCCACGGAGCTGAAATTTCCAGCTATAATATAGATATTGGGGAGGAGCTCCCCCTGTCGGTAGGAAGGACGAGTTACCACATACTGGAAAACCTGCAGCCAGAAACTACATACAGGATACGAGTACAAGCAGTGAACAGCATCGGTTCTGGTCCGTTCAGCTCAGTGCTGAAGCTCAGGACACGAGGTCTGCCTCCAGAGCCGCCTCTGCTGGAATGTGCTGTGGCCGGTCCTCAGAGCCTGAAACTGAAGTGGGGAGAAGGACCCAGCAGACCCCAGAACAGCCGAGGCACCCACTACTGTTTGCACATGCAGGTCGACACTGACAGGTCTGTGTGTATCTACAGTGGCCCCTGCCATACATTTAAAGTACAGAGGCTGTGTGAGGCCACAGAGTACCAGTTCAGCATTCAGGCCCACAGTGAAGCAGGCATGGGCCCCCTCTCCACCCCCTACACCTTCAGCACCACCCGCTCCCCCCCACCTCAGCTCAGAGCCCCAAAGGTTGAACCCGTTGAATGGAATAAGTATGCAGTCACGTGGGAGACGCTTCAGCCAATGAGAGGAGACCCGATCGTGTACAACCTGCAGCTTCTGAGGGGGCGTGAGGTGGAACagCTGTACAAAGGCCCTGCGACCTCCTACACGTGGCAGAACTCCACAACCGGCGTCAGTTGTCGGCTGCGGGTCTGCGCGGGCCGCCGGAGCCAGGAGGGCAGTGAGCTGTGGGGTCAGTGCAGCCTCAGCACCAGCCTGCCTGCGACTGCGCAGCCGAGGGAGCACAAGATCTCCAGCTGCCAGGACCCTCTGCCCAAGAGGAGCTGGCCCCTGACCGACGAGCCCTTCGCCACCATCCTGCTGTTGGGCTTCGTGGTGCTGGCAGTTCTCTTCGCCGTGCTCATCCAGTACTTTGTGATTGAGAGgcagtgaggaagaggagggcgAGGAAGgaggggggggtggggtggagTTTAAGAGCAGAACAGAGCAGAGAAGACCTCGTAGCACATTAGCTTCTTTTCCACTGTGGAGCCTGAGACTGTGGAGGTTCTGAGCACAGAGAGTATGAACTATGGACGTGAGTTTGGCGTTGTGGAATACAGACGATACCTACagtaaatacaggggttggacaatgaaactgaaacacctgtcatcattttagtgtgggagttttaggtttcatggctaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280586 lncRNA downstream 2921 20107097 ~ 20193718 (-) False LOC103040644
TU280583 lncRNA downstream 2921 20190037 ~ 20193718 (-) False LOC103040644
TU280587 lncRNA downstream 2921 20190037 ~ 20193718 (-) False LOC103040644
TU280575 lncRNA downstream 110146 20086177 ~ 20086493 (-) True G206784
TU280571 lncRNA downstream 121949 20074425 ~ 20074690 (-) True G206782
TU280668 lncRNA upstream 126180 20364914 ~ 20372471 (-) True G206843
TU280670 lncRNA upstream 126180 20364914 ~ 20372471 (-) False G206843
TU280666 lncRNA upstream 132154 20370888 ~ 20372471 (-) False G206843
TU280669 lncRNA upstream 132154 20370888 ~ 20372471 (-) False G206843
TU280685 lncRNA upstream 179582 20418316 ~ 20418553 (-) True G206856
XM_022683731.1 mRNA downstream 7886 20180310 ~ 20188753 (-) True LOC103043211
XM_007228400.3 mRNA downstream 55580 20125680 ~ 20141059 (-) False LOC103043510
XM_022683730.1 mRNA downstream 61799 20123147 ~ 20134840 (-) True LOC103043510
XM_007228404.3 mRNA downstream 91799 20099499 ~ 20104840 (-) True vamp7
XM_007228405.3 mRNA downstream 112179 20077520 ~ 20084460 (-) True LOC103045046
XM_007228398.2 mRNA upstream 1133 20239867 ~ 20244489 (-) True cysltr1
XM_022683735.1 mRNA upstream 134152 20372886 ~ 20382010 (-) True itm2a
XM_022683736.1 mRNA upstream 194791 20433525 ~ 20441496 (-) True LOC103041461
XM_007228393.3 mRNA upstream 268888 20507622 ~ 20512287 (-) True LOC103040850
XM_022684333.1 mRNA upstream 504418 20743152 ~ 20782984 (-) True LOC103039395
TU280287 other downstream 1357723 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 2154726 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 2895682 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3565588 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3567072 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 224969 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 224969 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 224969 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2671310 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2671939 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile