RNA id: TU281183


Basic Information

Item Value
RNA id TU281183
length 1051
lncRNA type sense_over
GC content 0.36
exon number 3
gene id LOC111195740
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 21979799 ~ 21982730 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGACCTCTCGCTCCCTGAAACAAAGCGCCTCATAATATACTGTtcactatactgtactgtagccCTGCTGTTCAGAGGATTTAATACAGAAAATGGAGGGGTTTGTTAAAACAGGTCTAAACCCAAACTCAGAGGTCGTGGCGGATTTCAGAGGGAACGATGGGTCCTTGGTTTCTGCCCTCAAAACGTTGCTGttctttacagttttaatgGTTACTGTGCCGATAGGATTATACTTCGCATCAAAGTCATACATCTTTGAGGGCTCACTGCAGATGTCCAACACAGATAGCTATTTCTACGCTGCTATTGTAGCAGTTTTGGCAGTACATGTGGTCCTAGCCCTTTTCGTTTATGTAGCTTGGACTGAAGGTTCACCCCAGAAGAAAAAGGGCAAGCATGATTAGACCAGTACAGTAAAACCTGTACAAATCCATATCACTCCACTGACACTGGGGGTGTATTGGTGGGGTGGGACATTTGATAGCTGTGTTAAATTTCAAAAGGAGGGACAGGTGTGAATTTATTTGgaaattatttgttatttatacttttaaagGTGTTGACACCACATCTTGATATGATGTAGATCAGATAAGCAGAAGTCtttagttttataaaaccaaaaTAATTTTTACTATGATTTTCATTAGATATGCAAACATTTGACAATTCTGAATCTGTGCCAAAAGTAGTATGCAATATCAGCTCCATGTGAATGCTAGTGCtggggtgtttgttttgttatatcTAAAACAAATATGAATAGCAAATCATTTTGCaattcacttttttatatacctctctcttttcatttttaagaaatggtcaaatttaattGCAGATCCAGAATGTCTTCTGAGATGGAGgtcaataattaatttaaaaaacggtATTgagaataaatgtttttataattttgcatTGTTCTCATTCAGTACAGTTGTGATTAATGTTAAATCTTTACTGTCATTGAGTGATGTCACTATTTGTAATATTGATGTCAGACATTCCCCAAGACTTTTTGAATGTTGTTTATGAACagtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281188 lncRNA downstream 31191 21946829 ~ 21948628 (-) True G207232
TU281174 lncRNA downstream 164169 21815266 ~ 21815650 (-) True G207218
TU280974 lncRNA downstream 292144 21686432 ~ 21687675 (-) True G207068
TU280931 lncRNA downstream 410230 21494614 ~ 21569589 (-) True G207038
TU280926 lncRNA downstream 449588 21527695 ~ 21530231 (-) True G207033
TU281201 lncRNA upstream 17545 22000241 ~ 22012713 (-) False G207242
TU281202 lncRNA upstream 17545 22000241 ~ 22012713 (-) True G207242
TU281203 lncRNA upstream 33904 22016600 ~ 22034647 (-) True G207243
TU281239 lncRNA upstream 344206 22326902 ~ 22376687 (-) False G207269
TU281241 lncRNA upstream 389644 22372340 ~ 22376687 (-) False G207269
XM_022683766.1 mRNA downstream 3645 21962543 ~ 21976174 (-) False LOC103037493
XM_022683765.1 mRNA downstream 3645 21962543 ~ 21976174 (-) True LOC103037493
XM_022683756.1 mRNA downstream 131339 21764104 ~ 21848480 (-) True LOC103034681
XM_007228377.2 mRNA downstream 349772 21623244 ~ 21630047 (-) True LOC103036162
XM_007228378.3 mRNA downstream 362531 21612833 ~ 21617288 (-) True LOC103036462
XM_022683777.1 mRNA upstream 53735 22036431 ~ 22042385 (-) True LOC103032567
XM_022683776.1 mRNA upstream 70528 22053224 ~ 22076039 (-) False cnot1
XM_022683775.1 mRNA upstream 70528 22053224 ~ 22076039 (-) False cnot1
XM_015601677.2 mRNA upstream 70528 22053224 ~ 22076039 (-) False cnot1
XM_022683773.1 mRNA upstream 70528 22053224 ~ 22076039 (-) False cnot1
TU280694 other downstream 1467675 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other downstream 1467675 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other downstream 1467675 20463703 ~ 20512144 (-) False LOC103040850
TU280287 other downstream 3140903 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 3937906 18039706 ~ 18041913 (-) False LOC111195732
XR_002651782.1 other upstream 927348 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 927977 22910673 ~ 22956024 (-) False LOC103035944
XR_002651783.1 other upstream 1241909 23224605 ~ 23225055 (-) True LOC111195748
XR_452612.3 other upstream 1956229 23938925 ~ 24020314 (-) False dnajc24
XR_002651784.1 other upstream 1973650 23956346 ~ 24020314 (-) False dnajc24

Expression Profile