RNA id: TU281239


Basic Information

Item Value
RNA id TU281239
length 2987
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G207269
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 22326902 ~ 22376687 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGCCACACACTTTGAAGCAGATATTTATTGGACAGAGGTTGTGCAACAGACATATTTGAGGTACATGATATGGTCATAGTGGAGGGAGGAGACAGAATCCTTAGGGTCATTTCTGACAATCAAGTGCTGGATGAGTAACTCAGGTGGTAACATGGTGGTAAGACTTGTGTTGGGCTGTTACAGTCAAAGTAACACACTTCTGCACACTTCAACAGTGTTGTATTGGCCTGGTTTTAGGTGTGTTAAGGCCAAAGCAGAGTGCGAGATGTTGAGATGTACTTGGTCAATTGAAAGATTGTACACAGTCCAGACTTTATGTTGCAGACAATCCGCACACATCTACAGAGATAATGGTTTTTGTGTTTAGCTCAGTTCCAACACCCATTTCTGAAGAAACACAGACATTTCCCCCCCGTCCACTATGGTTGGTTAAAGTCCAGGTGGGAGCCTTGTGCTGTCCATAAGCAGGAGACCACTAGAAGTAGAAGTACCCGCTTTGCAATCCATTCTTTGTGCTGTCCTTCAAAGGCCCCCATAAACTGATGAGTTGTGAGGTACTGAGAgatccatttttttgtttttgtccagTAAACCTGAGGTATAGACATACCATACTTACAGACTGTGGcagagaaaagaagagcaggaaaacaagagaaaagaaaaggcaaAAGGACCATGCTTTAAGAGCATACTGTACAAAAAGAGGATTTCCAGTCAAAcactcatttcatttcatttttaggATCTTCTATCACCCTCTACTTCTGCATTTTCAAAGTATTCTGTAAgcagtaaaataattataatacaatTGTTTATAAAATAGCAGCACACTCAAGTGACATCACAACTATGTTATTTTTGTGTATaagatgaaacaaaaaaatcatagcCTTTTagcagcgaaaaaaaaaaaaacaataataataactcaataaaaatattgacacttgATTGACGTCTTCACAACCACTTTTACCACTCTTCACTTTGGAATACAGTATCTCAAACCCTTAATTTCGGTTTGTATCCAAAACTCAAAACCACATAACCACCCTTAGgatctaaaaaataaacagtactACAGTTCATTTAATTGTTTCAGAGCTGGGAAAAAGGAATAAAACAGGAGAAcataaaacagaacaaaaaaatcagCTGACAAAGGGCTGTTTTGGTGCAAGAGTGGAAAAGTAACCCGACGTACGAAACCCAAACATCTTTAGAATGTTTAATGTTGGCAGAATAGGGGGTTTATAGCAAAAAACTCCTTCACCCACAGAAAGACTCAAAACAACTACACTCAGACAAAAGAAAGCTGGACTGCCCCTGACCTCTTCAGCACAGGCTGAGAGGACTCCTGTGCTGTTGATGCACACTGCCGTAGTCTTGGTAAAAGCGACGCAACCTTTGTTGACCCCATGCCAGTCCAACCTTTGGAAGcagcagtttttttgtttttgtttttttgtaaaggaGATGACTGGACAGTGGGCTTTACAGGCGACATGAGCAGTCTGATCAATGCACAGAGATACAGGGCATCATCACTCATAACATAGAATCAAGGCACCATATGAAAAAAGGCATTTCATTTCTCGGATAGAGCAGCTTCACCAGTTcgtctataaataaaaaaataatctgcgCTTGGAGCGTGCAAATCACCGATGTTGTAAGGCTTTATTTGACCATCTATGACAGAAGAACTACCATTCAACACCTGACTGAACAGAAAGCTAAACGTAAAAAAGTAAATGGGAGGGtgggctttaaaaaaataaatgtaatttcccTCTATTCAATTCTTTTTGGGAATGCtggaatgttattttttttctgttgtaggaatgtccacattGGCGTACCAACATACTGGGTCCAATGTCACGGTTTGAACATGGGAGACCAGCCCGCatgggaaaacaaaaaatacaagcaATTAGCCAATAACAAACATGACACCTTCACCATCAATTACCCATAAAGATCTTAGGGTGGGGGGCGTGGTggttaggggggggggggggttgggcaTATGTGCTCAAAAAGTGCTTTGCTGTTGAAACCGAGGAACTACAGACGCactgattaaaacaaaaagcaaaacaaaatggTTCCTCTACTCAATTCAGCTTCCCTGTGTAACACCTTCCCCACGAATTCGCTGGCAGTGTCGATTCAACTGGTTTAGATACTGGTCTGTAATCCAAAAACCTAGACAGACAAAAACGAACctgacagacaaacaaacaaacaaatagatagatagataaaaaaacttaaattaactCAAGACATCTCTGGAAACCACAACTGATCTTCTCCTTTGGCCTCCTCTCCTGTATGCCAACGTTACGTCCTCCTCAGCAGCAGCAAGCTTCTCTCATTTAACCTACACAgcttcatcatcatcgtcaccaccatcatcatcatcatcatcatcatcgtcaccTTTATCTCCTTTATCTGTCTCATCTGATCTCGAAATCTTACACCACCCTGCACTTTCATTTAAACTGCTTTGTAGAACACACACAATCCTAACTCTGGTCCATTCTAGCACCTCTTTGAGCGACAATCAAAGCAGCCTTGGGCTCCTTCAACTCGAAACAGCGAAacgaacaaacaaaaatatcgATTGTATAGTAATATTCAGctggaggttttttttttttttttaaataaaacagaacctCCTTCATCACACCCTTTAACACGAAAACATCATCTGTCTCCTCCCTCTCATCATTTCGGTGTCTCGCCTCCTCTCGGTCCTGTGCACCGAAGGCAGCGATACGGGCGGCCCCTCGTGGCCCTCTGAAAGCAGGCGAAAGCGCTATAGACCTTTCTCTTCCCCTGTGTGATACTCACTGTGCGGCCTTATCCTGAATCGCAGGCTTGCGGTTCACCAAAACTAAGCACACATatacgtctctctctctctttctctctctttctctctctctctctttctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281162 lncRNA downstream 79789 21764325 ~ 22247113 (-) False LOC103034681
TU281203 lncRNA downstream 292255 22016600 ~ 22034647 (-) True G207243
TU281201 lncRNA downstream 314189 22000241 ~ 22012713 (-) False G207242
TU281202 lncRNA downstream 314189 22000241 ~ 22012713 (-) True G207242
TU281183 lncRNA downstream 344206 21979819 ~ 21982696 (-) False LOC111195740
TU281250 lncRNA upstream 433 22377120 ~ 22377638 (-) True G207275
TU281258 lncRNA upstream 25686 22402373 ~ 22402783 (-) True G207282
TU281246 lncRNA upstream 27593 22404280 ~ 22406529 (-) True G207272
TU281247 lncRNA upstream 27896 22404583 ~ 22406529 (-) False G207272
TU281296 lncRNA upstream 206079 22582766 ~ 22583801 (-) True G207315
XM_007228362.3 mRNA downstream 206765 22082541 ~ 22120137 (-) True kdm7a
XM_022683776.1 mRNA downstream 250863 22053224 ~ 22076039 (-) False cnot1
XM_022683775.1 mRNA downstream 250863 22053224 ~ 22076039 (-) False cnot1
XM_015601677.2 mRNA downstream 250863 22053224 ~ 22076039 (-) False cnot1
XM_022683773.1 mRNA downstream 250863 22053224 ~ 22076039 (-) False cnot1
XM_007228359.3 mRNA upstream 13069 22389756 ~ 22392072 (-) True LOC103030564
XM_007228463.2 mRNA upstream 17353 22394040 ~ 22400515 (-) True fgf6
XM_022683780.1 mRNA upstream 30705 22407392 ~ 22452031 (-) False LOC103030249
XM_022683781.1 mRNA upstream 30705 22407392 ~ 22452031 (-) True LOC103030249
XM_022683779.1 mRNA upstream 30705 22407392 ~ 22435146 (-) False LOC103030249
TU280694 other downstream 1814758 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other downstream 1814758 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other downstream 1814758 20463703 ~ 20512144 (-) False LOC103040850
TU280287 other downstream 3487986 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 4284989 18039706 ~ 18041913 (-) False LOC111195732
XR_002651782.1 other upstream 533357 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 533986 22910673 ~ 22956024 (-) False LOC103035944
XR_002651783.1 other upstream 847918 23224605 ~ 23225055 (-) True LOC111195748
XR_452612.3 other upstream 1562238 23938925 ~ 24020314 (-) False dnajc24
XR_002651784.1 other upstream 1579659 23956346 ~ 24020314 (-) False dnajc24

Expression Profile