RNA id: TU281246


Basic Information

Item Value
RNA id TU281246
length 2250
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G207272
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 22404280 ~ 22406529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAGTCAGCATCTGCAGTCTCACATACTGTAATCGTCATAAATGATTGCTGCTTACAACTCACACAAATTACCAAACAGCTAAGGCCATATTACTGTTAATTACCATATAATTCTGCAGATTTGCTGATACCATAAACACTGCTGTTTGTTTAGAGATtttggcattagctgctaaactgaattttcatgtcttcactgccatttatattaaacatttagatattttatattgtttctaGATCTAGTTGTTGACCtacatatgttttaaaatgactCAATCTGTTCTCCGGGCTTcggaacatgtttttttcaagTTGATAACCATCTGACCTCTGTATGATATGAAAGATACTCAACTTTAAAGtgcctgattttttttatgtaaataggCAATTATTTACAATGCCTTGAATACGttttcataccccttgaactttccCACATTATTCCACTGTATTTTCATGTGAAACCAACAaagttcatttaatttaatttattgggATTTTATGTGATAGACCAACCCAAAGTCGCAAGTGCCTgtgaacagcaatgtttaaGTCTTGACACAGATGCCCAATGAGATTTAGGTAGGTCAGGACTGGGTCACTGATCTAAACCCtaccactgtagctctggctgtatttttagggtcattgtcctgctggaaggtcTTAAGTCTTTTGCTGCGtctaacaggttttcttccaggattgtcctgtattaatctccatccatctttctatCAACTTTGAGTAGCTTCCATGTCTCTGCTGAAGGAAAGCCTCCACACAGTaggatgctcccaccaccatgtttcacagtgaggATGTTGTGTTTAGGGCGCCAACAATAGTGCTTTGCATTTaagccaaaaagttcaattttggccAATATTATCTTTTTCCCACAGTGAGCATGGGCCTCTTGAATTCTCCTCTATTGCTCAAGCTGTCAGTTTAGGTGGacagccatgtcttggtaggctTGCAGTTGTACCATAGTCCttttatttttggatgatggattgaacagttcTCTTTGATATACTCAAAACTtgggatgtgtttttataacatAGGTTCTTgatcttcatgatgctgtttgttcactagtgttctctaacaaaccacttcATAGGCCTTCATAGAACAGCTGTagttatactgagactaaatgaCACACAGCTGCAGGACTCACTAATTAGGTGACTTTTGAAGGAAAGTGGTCAcattggatttatttatttagtgcttTTAGAGTAAAGAGGGCTGAATAGAAATGAAAAGTGTGGACAccacatttttatgatttttatttatttaaaaaaaattaaaccatgtataatttttatctttacttcacaattatgttgTGTTGGTCAATCACAAAAATGCTAATAGATTACAAGCATGCGCAAGTGTGTAGaaaagtgaaaaagttcaagtggtattaatacttttttaaagctcTGTATCAAGTGGCAATGGCAGTGTGATTCCTCTTCTTGTGACGGGAAGTTAAATTATGCTTTTAGAGACTAACctgctattttatatatttttaattgctgTCACATTCATCATCTTACCCTAATTATTTATACATGGCTAACAAAATGGATTAGCATTCATTTGCAGCAGAGTTATCGAGCTATTGACGATGCTGTGTATAAACGAGCCTCAGCACAAAACACTGTACAGCGTACCACCATCCATCACCCCTGCTGGGCTCTGCGTGCCTCATAATGAATTTTAATAATGTACTTTACAGCGTGCTGTTCCTCagtgtaagagcacattaactgcTTTAAGACTGCTTTAACTGAGACACTTCAGCATAGCTCAGTGTTGTTAGTCGTGTTGCATATTATATCGATGGGTATCTGATCTGTATACTGGTGTAATCAGTCAGAATACTTATAACCACTGTACTTGCTAAAAAAAACCtgggatttcttttttttttttttttttacaaaaatcatgtttttaatagctatcacattaaattaagcCTTTTGTAACAAAGCTGATCTCCGTTATCTGATTACTGCTGTTACTCATTTCTTACATTCTTTTGCATTAAAGTACGTAGTTCCACTGCTTACacttttattagtattttgcACACAAGGATATACAAaattgttttactttattttaactgaCCACATATAACTCTTGAGGCATCTTTTGGATCATATTTTCGGATCATTTCATCTAAAAGTTGATTTCCCAGCCTAATGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281258 lncRNA downstream 1497 22402373 ~ 22402783 (-) True G207282
TU281250 lncRNA downstream 26642 22377120 ~ 22377638 (-) True G207275
TU281239 lncRNA downstream 27593 22326902 ~ 22376687 (-) False G207269
TU281241 lncRNA downstream 27593 22372340 ~ 22376687 (-) False G207269
TU281242 lncRNA downstream 27593 22373511 ~ 22376687 (-) True G207269
TU281296 lncRNA upstream 176237 22582766 ~ 22583801 (-) True G207315
TU281316 lncRNA upstream 282211 22688740 ~ 22689592 (-) True G207333
TU281552 lncRNA upstream 300905 22707434 ~ 22708157 (-) False G207505
TU281553 lncRNA upstream 300905 22707434 ~ 22709445 (-) True G207505
TU281554 lncRNA upstream 305348 22711877 ~ 22735025 (-) True G207506
XM_007228463.2 mRNA downstream 3765 22394040 ~ 22400515 (-) True fgf6
XM_007228359.3 mRNA downstream 12208 22389756 ~ 22392072 (-) True LOC103030564
XM_007228362.3 mRNA downstream 284143 22082541 ~ 22120137 (-) True kdm7a
XM_022683773.1 mRNA downstream 328241 22053224 ~ 22076039 (-) False cnot1
XM_022683780.1 mRNA upstream 863 22407392 ~ 22452031 (-) False LOC103030249
XM_022683781.1 mRNA upstream 863 22407392 ~ 22452031 (-) True LOC103030249
XM_022683779.1 mRNA upstream 863 22407392 ~ 22435146 (-) False LOC103030249
XM_007228357.3 mRNA upstream 53517 22460046 ~ 22477263 (-) True c24h12orf4
XM_007228349.3 mRNA upstream 184503 22591032 ~ 22601463 (-) False LOC103027701
TU280694 other downstream 1892136 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other downstream 1892136 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other downstream 1892136 20463703 ~ 20512144 (-) False LOC103040850
TU280287 other downstream 3565364 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 4362367 18039706 ~ 18041913 (-) False LOC111195732
XR_002651782.1 other upstream 503515 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 504144 22910673 ~ 22956024 (-) False LOC103035944
XR_002651783.1 other upstream 818076 23224605 ~ 23225055 (-) True LOC111195748
XR_452612.3 other upstream 1532396 23938925 ~ 24020314 (-) False dnajc24
XR_002651784.1 other upstream 1549817 23956346 ~ 24020314 (-) False dnajc24

Expression Profile