RNA id: TU282337


Basic Information

Item Value
RNA id TU282337
length 2868
lncRNA type sense_over
GC content 0.35
exon number 3
gene id LOC111195762
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26079764 ~ 26086504 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTTTAGCATAACCATTTCATCTTTAATcgtaataataatgtacagtTAGGCAGACAGAAgagacaataataaaatgaagaaaaaaaaaagcaatacacTGAAAGCcgtatacatataaaaaaaagtaaaaaaaaaaacacacacataaggGGTGGACTTGGGTTTTGGGCTCAGGCATTATGAAAACGTTATGAAAAAGTTTTAGGAATTGTTAAAGAAAAGTTTTGGAATGGTTTTGCGAGTCATAAGAGAAAGATGAAGGAATATTTTGGGAAGGAATAATGTATCGAAGGGTAAAAAGGATTTCAGAATGGTTTGGGAACATATTGGAAGTTGATAGGAAATGGCTATGGAAAGAACAGAAACGGTTAGAGGTAGACTTGGGGAAAGGTTTGGAAATGATTAGGGAAAGATCTTGGGAAGGTATAGTGGGAGGTTTGGGAATGTTTAGTAAAGTTTGGGAATGATTAGGGGAAGGGATTAGGGAAATTCTGATAATGGTTATAGAAAGTTACTGAAAGGACTGTGAATATTTAGAGAAACATTTAGGAATATCAAAGGAATGGTTTTGGGAATGGTCAGGGAGTGTGTGGAGAATGATTAGAGTGAAAGGTTAACTCTGAACTCTGCTCTATCCAGAGTTCTGAGCGGTGGCTGTAGTGACTTTATATCACAGCCGGAAGAACGAAAACTTTGAGCTTGCATAGTGAATGACTGTATTTGTGTGTCTGCATTTGTTTTACTTCCTCTTGGTTGTGTTAAGAGTTGATGTTAGTGGCtaaatgtgtatgtgtttgtgtgtgtgtttgtgtgtgtgcatgcgtgctAATATGTCCTAATATGTACTATTTGGCCTGTGGTAGTCTAGTCTTAGGGCCTGTTAGCTGTAAGCTTGGCTTGTAGAAACAAAATGAGCTAAAATATTCAATGTGTTGAGCAGAGTGTGTCCAACAAGTTTAGCAGCCTGGTATTAAATTGAGTGGGATGGACGCTTCCTCCAGTCTCACAAACAGAAAGATTCCTGATCCAGGGTCAGACTGTTACACTACCCACAGTTACCAATACTCAGCATCAGTGCAGTACTCTAATATACTGCACCACTAGCTGGTGTCTGCATAGCAAATAGATACAGGCTACAGAGAAAACTGCACTGAACAAAGTGCTGCACTAGATGAATCTGGATTATGTTTtacttataaaacatattaacttAACTCCACTAAtgacagtaagtaagtaaacgGAAAGGGATGTAAAAATGATGCTGATATAGATCATTCTAGAACATAATTTCTAATTTAATAACTTACTGAAGTTCTTAAAGACTgaattattgaataaaacatgtCTAgcttacagtattttagtatacAGTATCTACACTGTATAAGGCGTACAGTAACTAATACtattataaatacaaatttataGAACATTTATACACAAAGCAGTGGTTTTACATCAGTGTTGTCAACTTGTGACAATCTAGCTGtacttatattaaattaatttatagttattatattatagctaaatcaggtgagctgatgatcaaattaattaaatacatcCAAATGAGTGCTTGCAACATATGAAGTAAGTAATCTTTGTTTcttttactgcatttttcaTTATCTTTACCTGCATCTGTTctggttaatgttaatgttatggctactgGTAATTTGTATAGATAGTAGTATGCATTAGTGATAAAATCACTAATTAACAACAAACAAGGTATATGTACTGTAGCAATAATAACCTTTAAAGATAAGctttactactttactacaAGATCAGCAATCTTCATGTGAGGAGAACCTGGAGGAAACATCTCATCATCCTCAATAATGAGGGTCATGGGGGTTAATGGTAAAATGGGGGCACAGAATAAGAGTAATCACTCTACAGATAAAGAAACATAAATGGggaaaaacacaaatagaaaaaaaagaatacatgcCCTTTCAGTTTGTGCTGTTTTGCAACAGAATCAGGGCAAATGGAACCGTTACATAAGTAAGTATCAACAGTACTGTCATCATAACCATCCACATCAGTCATCACTGTTATCATTGAAGACATTTGGACACCCATGCTGATGGTGCATTACACTATGTATTATAGGGACACTAATATTTGAATACATATTATCCAGCCagggtttattattattatttttattattattattattattattattattattattagaacgGCAAAATGAATTTATTACAGTTGAATCAGATGTGCTTTAACTGTACAGAGATGTGTTACTTGGGGAGGATCTTCAGACACTATCTCATGACTATATTCATGACCCcctattaaaaaacacacactcacacacacacacacacacatatacactcagacacacacactcacacacacaaaccagagACACATGTAACTGTATCATCAATCTCCGATAATACCTCCTCTTACCATCTAACCCTTACATTACAGACCACAGTCCCACTCAGCccatatttggtaaaattaatacagcTTTATTCAACCGCACTAAACCCTTTAACTCACGTTCACAGCCACATCCTCTACCTTCTGATTCAAATCATCTCTCAATATGAGCCAAACCCTTGAGAAAAACCTGACGAAAGTGTGTGAAAGCGGCTGTAAACAAGCCTGCTATGGTTAAAGCAGTCGCTCCTATAAAGCTATAAGAATATATTTCACACGgatgtcttttttgttttacataaaatgcaatatacatacatatatatttttttcaattttacaaATCACATATTctacctttaataaaataaaatatgacacAAAAATCTGACACATTCACTGTACATTTCACTGCTTTATCACTCACACACTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282339 lncRNA downstream 3118 26061311 ~ 26076646 (-) True G208015
TU282331 lncRNA downstream 64761 26014747 ~ 26015003 (-) True G208011
TU282327 lncRNA downstream 66148 26007220 ~ 26013616 (-) True G208008
TU282270 lncRNA downstream 162204 25903907 ~ 25917560 (-) True G207965
TU282268 lncRNA downstream 185287 25893140 ~ 25894477 (-) True G207964
TU282333 lncRNA upstream 245 26086749 ~ 26088359 (-) False LOC111195761
TU282347 lncRNA upstream 5307 26091811 ~ 26095197 (-) False G208022
TU282349 lncRNA upstream 5675 26092179 ~ 26099823 (-) False G208022
TU282346 lncRNA upstream 10289 26096793 ~ 26099823 (-) True G208022
TU282351 lncRNA upstream 16983 26103487 ~ 26105834 (-) False LOC111195835
XM_022684337.1 mRNA downstream 87483 25989564 ~ 25992281 (-) False LOC111195825
XM_022683893.1 mRNA downstream 146562 25922581 ~ 25933202 (-) False LOC111195756
XM_022683890.1 mRNA downstream 394153 25681230 ~ 25685611 (-) True LOC103040521
XM_022683882.1 mRNA downstream 507493 25496301 ~ 25572271 (-) True znrf1
XM_022683879.1 mRNA downstream 627673 25412186 ~ 25452091 (-) True LOC103040081
XM_022683899.1 mRNA upstream 147 26086651 ~ 26088415 (-) True LOC111195761
XM_022684393.1 mRNA upstream 5666 26092170 ~ 26095191 (-) True LOC111195867
XM_022684340.1 mRNA upstream 10301 26096805 ~ 26099827 (-) True LOC111195834
XM_022684342.1 mRNA upstream 16983 26103487 ~ 26105904 (-) False LOC111195835
XM_022684343.1 mRNA upstream 157744 26244248 ~ 26246421 (-) True LOC111195836
TU282304 other downstream 87270 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 141732 25919220 ~ 25938032 (-) True LOC111195756
TU282224 other downstream 371454 25648624 ~ 25708310 (-) False G207940
TU282385 other upstream 125554 26212058 ~ 26212841 (-) False G208046
TU282386 other upstream 125554 26212058 ~ 26212769 (-) True G208046
TU282801 other upstream 568939 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 1059532 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 2172800 28259304 ~ 28268342 (-) False wwp2

Expression Profile