RNA id: XM_022683899.1


Basic Information

Item Value
RNA id XM_022683899.1
length 496
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC111195761
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26086651 ~ 26088415 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCAGACTAGGATAAAGATCAGAGACGAGAACATTCAAGGGTTCAGAGACCTGGAGAGATGAAGaagataagctgtgtgtgtgcggcCCTGGGGCTGGTTCTGCTGATAGCAGTCTCCTCAGTATCCAGCACTCACGCCGCCAATCAACCGATTATGTGCTGTTTTCACTTTGTGAAATTTAAAATTCCAGTCAAAAATATCCTTACAGTTGAAAAGACAGGTTCCGACTGCCCGATCCCTGGCTATGTGGTTACAACACCTCGGGGCAAGTTCTGCAAGCAGGAAGATGTTCTTCAAGACTAGATTCAGTGCAGCTGCTTCTACACCACTAATCTGCAGCTCAAAGTGCAGCTAAAATACAGCTTAATATGCTTCTTTATATACTCATATATGCAATCTTAATATCAtcaaagtggatttttttttcttttcagtatgTACCAATGCTTCTTTTATGCtgcagataaaaataaaaatgcatggcCTGAATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282337 lncRNA downstream 147 26079764 ~ 26086504 (-) True LOC111195762
TU282332 lncRNA downstream 1201 26084572 ~ 26085450 (-) False LOC111195762
TU282339 lncRNA downstream 10005 26061311 ~ 26076646 (-) True G208015
TU282331 lncRNA downstream 71648 26014747 ~ 26015003 (-) True G208011
TU282327 lncRNA downstream 73035 26007220 ~ 26013616 (-) True G208008
TU282347 lncRNA upstream 3396 26091811 ~ 26095197 (-) False G208022
TU282349 lncRNA upstream 3764 26092179 ~ 26099823 (-) False G208022
TU282346 lncRNA upstream 8378 26096793 ~ 26099823 (-) True G208022
TU282351 lncRNA upstream 15072 26103487 ~ 26105834 (-) False LOC111195835
TU282352 lncRNA upstream 15072 26103487 ~ 26117632 (-) True LOC111195835
XM_022683900.1 mRNA downstream 1010 26083164 ~ 26085641 (-) False LOC111195762
XM_022684337.1 mRNA downstream 94370 25989564 ~ 25992281 (-) False LOC111195825
XM_022683893.1 mRNA downstream 153449 25922581 ~ 25933202 (-) False LOC111195756
XM_022683890.1 mRNA downstream 401040 25681230 ~ 25685611 (-) True LOC103040521
XM_022683882.1 mRNA downstream 514380 25496301 ~ 25572271 (-) True znrf1
XM_022684393.1 mRNA upstream 3755 26092170 ~ 26095191 (-) True LOC111195867
XM_022684340.1 mRNA upstream 8390 26096805 ~ 26099827 (-) True LOC111195834
XM_022684342.1 mRNA upstream 15072 26103487 ~ 26105904 (-) False LOC111195835
XM_022684343.1 mRNA upstream 155833 26244248 ~ 26246421 (-) True LOC111195836
XM_022683916.1 mRNA upstream 525447 26613862 ~ 26640223 (-) True LOC103031232
TU282304 other downstream 94157 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 148619 25919220 ~ 25938032 (-) True LOC111195756
TU282224 other downstream 378341 25648624 ~ 25708310 (-) False G207940
TU282385 other upstream 123643 26212058 ~ 26212841 (-) False G208046
TU282386 other upstream 123643 26212058 ~ 26212769 (-) True G208046
TU282801 other upstream 567028 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 1057621 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 2170889 28259304 ~ 28268342 (-) False wwp2

Expression Profile