RNA id: XM_022684342.1


Basic Information

Item Value
RNA id XM_022684342.1
length 551
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC111195835
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26103487 ~ 26117632 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTACTGTGACAACcatcttaaaataaatgttagagaaaaaagtcatttaagtaaagacagagagcagaagagagagagagacagtccaAGCTTCAGATTCCTCTGCAGAGATGAAGATGagcagtgtgtggtgtttggcCCTGGGGCTTGTCCTGctgacagtgtcctgtggtgCAGAGCCTCATGGCATTGGTCATCCTGATCAGTGCTGTTTCCAATACACCACTGTTAAAATTCCACCTAAGCAGATcgataaagttgagaaaacaaGCCCCCAGTGCCCAATGCCTGCCTTTGTGGTTACAACAGCAGCTGGGAGAAAGTTCTGCGTGCAAGAATTCCCAAAGATCTAAAACAGTCTGCTGATTTTTTGTGTTACAGCTTTTATACAACCCAACAGCACAACTTTGTGTCTAACAAGCATTTCATCATGTTTAATTCAGCTTTTctttaatcagtcagtgtgtTGCTTTCTGTCAATGCTAAAAGTAAGTTTTACACCTTTTAAAATTTGATGCTCATAACTTTTTTCAATACttgaataataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282349 lncRNA downstream 3664 26092179 ~ 26099823 (-) False G208022
TU282346 lncRNA downstream 3664 26096793 ~ 26099823 (-) True G208022
TU282347 lncRNA downstream 8290 26091811 ~ 26095197 (-) False G208022
TU282333 lncRNA downstream 15128 26086749 ~ 26088359 (-) False LOC111195761
TU282337 lncRNA downstream 16983 26079764 ~ 26086504 (-) True LOC111195762
TU282360 lncRNA upstream 15573 26121477 ~ 26122367 (-) True G208026
TU282361 lncRNA upstream 17443 26123347 ~ 26124768 (-) True G208027
TU282369 lncRNA upstream 21203 26127107 ~ 26157046 (-) True G208030
TU282365 lncRNA upstream 28682 26134586 ~ 26155268 (-) True G208029
TU282366 lncRNA upstream 28682 26134586 ~ 26141484 (-) False G208029
XM_022684340.1 mRNA downstream 3660 26096805 ~ 26099827 (-) True LOC111195834
XM_022684393.1 mRNA downstream 8296 26092170 ~ 26095191 (-) True LOC111195867
XM_022683899.1 mRNA downstream 15072 26086651 ~ 26088415 (-) True LOC111195761
XM_022683900.1 mRNA downstream 17846 26083164 ~ 26085641 (-) False LOC111195762
XM_022684337.1 mRNA downstream 111206 25989564 ~ 25992281 (-) False LOC111195825
XM_022684343.1 mRNA upstream 138344 26244248 ~ 26246421 (-) True LOC111195836
XM_022683916.1 mRNA upstream 507958 26613862 ~ 26640223 (-) True LOC103031232
XM_022684351.1 mRNA upstream 567702 26673606 ~ 26715253 (-) True cep290
XM_022683919.1 mRNA upstream 686858 26792762 ~ 26815459 (-) True kitlg
XM_022684352.1 mRNA upstream 840390 26946294 ~ 26949370 (-) True LOC111195856
TU282304 other downstream 110993 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 165455 25919220 ~ 25938032 (-) True LOC111195756
TU282224 other downstream 395177 25648624 ~ 25708310 (-) False G207940
TU282385 other upstream 106154 26212058 ~ 26212841 (-) False G208046
TU282386 other upstream 106154 26212058 ~ 26212769 (-) True G208046
TU282801 other upstream 549539 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 1040132 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 2153400 28259304 ~ 28268342 (-) False wwp2

Expression Profile