RNA id: TU282367


Basic Information

Item Value
RNA id TU282367
length 4054
lncRNA type inter_gene
GC content 0.40
exon number 9
gene id G208029
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26134586 ~ 26155268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATCATTAGGGGTGACCAAACTTTTGCACAAGACTGTGAAACCAACCAaagctgaaaaaagaaaactgatcTTTAGACTCTTATTTTGAGTGATCTGTTCTGCCTCAAAAGTAAAAAACTGAATCTGAAACTCTTCTTCTTTCTATTTCTTGCATTAATAACACATTTCATGTCTGTACTGTACCTGAAATGTACTTTTGAGGTCCCCAGATTGAACAGattacttttctgcattaaaggCCCCTGATGATTTTCCCTTTGTATCTTACTGGAGGTGGACAGTTGCTGACTGTTTGCAGTAGGAGGGGCCTCCTCCACCTCGGAGGGGTCCTACTCTCAGGCACCCCATGTTTGGAGAGCTCTAATCCAGCTTTCCAGTCTGGTTAGTACTGCTCAGTCTCAGCAGCCAGGTGGCCCATTCACGCTGGAGGCCACCACAGGGGGGTCGAGGGCATACAGAAACGGCCGGCCAGCCACAAAGAGCTGGACGTCCAATCGCTGCTACTGAAAAGATTGGCGCCAAACCCCAGAGGCTCACAAAGAGCAGCCAGTGCAGGAGCGCTGATCTAAGACCAGAGATTTCTGCCTAGTTATGATGATCAACCATCATAAGAGCTGGTCTGAGAGCAGCGCAGTCCCCCTGAGGGAGATGCTTTGTTCCAGATGGAGGCCCCTCGAATAGCAAAAGCCCCCAAAATATACACTCCCACGTCACATTCGGACTGTTCTCTGAAACTTCTTCATCTCTGAGCGAGCGGCCCTGCCCACTTCCCTCAAAACACAAGAGAGCTTCCCGCCATTCTCAACACTGTCTGCTCTCGGTCttttacttacacacacacacacaaataccatCAACATACTGTACTACAgtgatattatacagtatagtaATCAACCCTGCCCTGAAGCACTAACAAAAAGTTTTCCACTACAGCAACTGACGGAGTGATACACTAAGTCTGAAGTTGTGCTTCTTATTCTTCTGGGCATCCCTGGTCACCATTTCATTCTCAGATTACagaagtagaaagtagaaaagtAACTGGGGTCTGATTCACTAAAAAAAGGTCTAAAGAAAGAACTATGTCTTAGTTGTTTTTAGAAGCTAAGGTACACTATcttatctaaaatataattctCCTCCTTTCCAATCCCAGGAGAAAGAGCAGGAAGAATAGAGAAAAGGAACAGTAATTAGAGAAATGAACCAGCTGATCCTTTTTAATAGGGTGGTGACTActgatgaactgagccaatcacaatgctCAATTTCAGCTCACCCTACTACTACCCCAGCCAATCGTAGCTGCTGCATATGGCCATACTTTTGTATGTGTTAATTGTGGATGGATAAAGACAAACTCCTGCTTCTTGCTCTGAACTCCTGCTTCTATAtacatagctctggaaaaaaaataagagacaacataaaaatgacgagttttgattttacctaattgaaataATCAACAGGAAGgtataaagttacccaaaagcagtgtgtaaggctggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaccagggttattccaccaaatattgatttcggaactcttaaaactttatgatgggAACTAgttttcttgcattatttggcgtctgaaagctctgcatattttttaaatgtcagccatttctcattttctgcaaataaatgctctaaatgacaatatataacaataaacaataaatagtttagaatagaatacaacaacaatgttcattttactcaaacatatacctataaatagtaaaatcaaagaaactgattcagaaactcgagtggtctcttttttcttatttccagagctgtatgtatagaTATCTCTTTCATTACACCACAAATCTCATATTTTCCCTAATAAAAGATTGTTTATTGATATTTCTGTTGGCCATATCTTCCACTATCACCGTTTTAGCACTGGATATTTGTATCCTGAACTCGATTCAGTTTTTTCCtcagtttttacatttaagaaTGTCTTCAGAATGAGATTCATTTGGTGAACCGTATCTTTAATATTAGCTACTGTGCTTCTTGTAATAAACTCACATGTACACAAGTACATGTTATTTAGTAATAACTGCGAAACcctacactttaaaaaaaagctgctaCTGTGGTCCCCTCACATCACAACCAGCAACACTATGGGCTGTAGCACCCTCTACTGCTGAACAAGGGGAGGTCCCATCCTAACCTGTGcttgatgataaaaaaaaaaaaaaaactgtatcaacatgaaaaaaaaacagctgtttatataatattataaagaaTATTATAAATGCATAGATGAAGCGGTTACAGATGGTGAAGTGTCAACTCTGAACCAGTAACTGCAATGTGTCAATGTGCAATTTATATCTATTTAAAGAACACCAATTTTCTATAgcaaaaataaagtgttaataCTTTCTTGCGTAGTCATGGGGCTACTCATATTGTTTCAACatgaaatatatacattatatactatAGACATAAACCAGGAAGGGGGAGGACACAATATTGGAAACACCAAAACAGTATAAGGATATATTAGTAACAAAGTGTTACAAGGAAAAGCAGCGTAGACATGTTTTTATACCTGTCCTGGGACATTTACTTTGCATTTAAGGACTGGATTAGAGCATATTTCAGCTACTGTTTAgtgcacatactgtatatttgcaGCAGAACTTTAACTATATCAGAATTCTGATACTGATACTAAGTATAACATCGCAACAGTACTCAAATTGTATTTGttctttaataataacaataataagagatttttattattattgttatttgtattgatagtattactactaatactactattattattattactactgagCATCTCTAATCCCTCATTACATAAAGAGGTTTGTTTTAATCTTTCAAGAATAACCATTAGTATATTGGTAAACttccaaaatattaaaaagaaaatgagtgTACCGTTTATCTTTTGGTCAGTTCAAAATATGATGTTTCCAGTATTGTGCCCAAAAATAACTGCATCTGCTTtctgtattaaaaattataattcaCATCTTAATTGTGTGcttaaacacatttcaaaaagttctaaaaaaaaatctaattggtcaaaaacaattataaatcTTTTTATAATCTCAGTTAATAAAGGTCTGTGAAACTAACTGTACAGtctaaagtttaaaatgaggggtgtcacTGGGGCACGTCCCCTGGGTGAGCATCCTGGAGGAAGGGGACAAATGATGAGCGGACCGTGCGTCCCTTAAGAGGCTGCTGAACACGGAAGTTGTTCACCATGCTCTTCTGAACATCCTCTTCAGCTGAAGTGAAGAGCAAGCTTCGAAACACAGccagTGATCATGGCTGACTTCTATGGGCTGCTTCATGATGATCCATGTGACTGCCTCGGTCAGCGGGGGCGTGGTCAGAGAGCCGGCGTACGTCCAGTAGTCCTGCGTGTTCTCAGGCAGGAGACCGGAAGCGTCAAACCGAGTGAACTCCACCACACTGTCTTGTGTCGAACAGCAGGTAAAGCGTCCACCAACTTCTGCAGTCCCTCGTGCCGCTTTCCAACCTTAAGGAAGACTCCAATGACAGCCAAGCCATTGTCCTCCATGACTGCTTCCTCAAACAGGCTGTACCTATCAGCGTTCCAGTGTACCAGGTGGAGCTCAGCTGGGTAGAGAAGATGGTCCACAGTGTGTTCAGCACCCCACTTGTTATTCTCTCCCCAGTGGAAATGAAACTGGCACAGCCTGAACTGATCCTCCAGTGGACCCCCTTGCAGTGTCGACTTGTCTGTGGTGTCGTCATACTCGACTAGAAAAGAGTAACCGTTATTCCAGATTTGCTGGCAGGTTCTGGGGTCGTACTTCATAACGAGAGGTTTGAGCTGAGGGTCAAACATGCTTTTCCGCACAGAGATGTCGATGGGAGACTGGCGCTCTCCTCCCGGGATGGCCAGCGGCTCCTGCCACATCGGGTGCACTAAGACAAGAAAGACAAAGTCCACATCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282361 lncRNA downstream 16235 26123347 ~ 26124768 (-) True G208027
TU282360 lncRNA downstream 18636 26121477 ~ 26122367 (-) True G208026
TU282352 lncRNA downstream 23371 26103487 ~ 26117632 (-) True LOC111195835
TU282351 lncRNA downstream 35169 26103487 ~ 26105834 (-) False LOC111195835
TU282381 lncRNA upstream 8647 26163915 ~ 26169806 (-) True G208042
TU282387 lncRNA upstream 59631 26214899 ~ 26215110 (-) True G208047
TU282388 lncRNA upstream 60185 26215453 ~ 26215729 (-) True G208048
TU282411 lncRNA upstream 125179 26280447 ~ 26281036 (-) True G208070
TU282696 lncRNA upstream 206818 26362086 ~ 26362363 (-) True G208307
XM_022684342.1 mRNA downstream 35099 26103487 ~ 26105904 (-) False LOC111195835
XM_022684340.1 mRNA downstream 41176 26096805 ~ 26099827 (-) True LOC111195834
XM_022684393.1 mRNA downstream 45812 26092170 ~ 26095191 (-) True LOC111195867
XM_022683899.1 mRNA downstream 52588 26086651 ~ 26088415 (-) True LOC111195761
XM_022683900.1 mRNA downstream 55362 26083164 ~ 26085641 (-) False LOC111195762
XM_022684343.1 mRNA upstream 88980 26244248 ~ 26246421 (-) True LOC111195836
XM_022683916.1 mRNA upstream 458594 26613862 ~ 26640223 (-) True LOC103031232
XM_022684351.1 mRNA upstream 518338 26673606 ~ 26715253 (-) True cep290
XM_022683919.1 mRNA upstream 637494 26792762 ~ 26815459 (-) True kitlg
XM_022684352.1 mRNA upstream 791026 26946294 ~ 26949370 (-) True LOC111195856
TU282304 other downstream 148509 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 202971 25919220 ~ 25938032 (-) True LOC111195756
TU282224 other downstream 432693 25648624 ~ 25708310 (-) False G207940
TU282385 other upstream 56790 26212058 ~ 26212841 (-) False G208046
TU282386 other upstream 56790 26212058 ~ 26212769 (-) True G208046
TU282801 other upstream 500175 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 990768 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 2104036 28259304 ~ 28268342 (-) False wwp2

Expression Profile