RNA id: TU282754


Basic Information

Item Value
RNA id TU282754
length 1595
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G208357
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26586222 ~ 26588390 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCAGTAGTGCAATAGTGTAACTGTAGAGGGAGCCCGGGAGCATGACTATACTAATTCTCACATACATCTGCTTTAAAATGAAGCTAGTGTTTTGTTCACGATTGTATGTAATGAACAAAAAgaatacaatttaaatacctttattaaaataaacatttttaaagctataaaacaacaaacactACTCTGGACAAAGTCATCTTTGGAGCAGTGGTACCCCACTGCagctacaaataaaaacaaagaaatagaaACATAACATGTAAAGGTTGTGACATCACTTGTGTACTTTACTCATAGGCCATGCATCACAGTGAGACTCCACAGGTGCTCTATGAGAGTGGCTCAGTCTTCCAACAACAGTGACACAGCAAAAcaaacgtaaaaataaaatcaagcgCTTCTATCCTAAGACAGTGCTGGATCGCACACACATTTCATCTGGTTGAGCACTAATTGTCACAACGCTAAGACAGCAGTTACTGATGGTAATCTTGGGCTTAGCCCCAGACCTTTGTGTTTTGACTGGAAGACTGAGAATCACTGCATTAACTCAACAGCCCACTTTGTAGGGAATAAGAAATGTACAGACTATTGCTATATCAGACTACAAAAGATTGCACAATACTATATACTTTTAAGACAACTTGACATTCTGgtgctttcttttttctgtttatgtacCATATAggcttgcattttttttttcttttttacaaaaacatcaATCTAGCTTTAGTAGTTCTCTGTGTTAAACATCAGTCATGATCAGGATAACCATCATTAATTAAAGTGGAGTTTctctttaaaaaacatcaaGTGACTGACTGATTACCACAAGGTGGATAGGGGTTTTCGTTCTATTACAACCAaaatgtctttctctctttaaaaacactgcaaaacattATATGTGCTCACTGCTGGGGCAGAAGGCTGGTCTCTGAGGCTCATAAGGCAGAAAGAGACGGTCACAAAAGGCAACGTGGTTTTTGCTGCCTAGCCCCTCACTGCAGTGATTTGCGTGTGCAGGGGTGGAACTGGATGGTGGGAGTGCGTCAGACGGCTGGGGACGGTGCATCTGGATCAGGCTCATAGTGGTGGCTGGGCTGAGGCTGGTGGCTGGGGAGGATGTCTAGTTCGTCCACCTGAGGCCCGGGATGCATGACGACCAACTGATCCTGAGGGATGTCTGCAGCGGCGGCCGCCAGGTTGGTGATGGATTTGCTCTTGACGCACTGAAAGTCCACATGGCGACTCTTGCCCTCCTCCTTTTCCCAGGACATGCGAATGAATGGCCTCTGCACATAGTTGTAGATTACCTCGGGCCGGCCACCGGGACGTTTCTTAACTTTCTCTTTGTAGGTTGGATAGCCTTCAATGCCTAATCTGATTTTCTTCAGTCCTCTCTCCTTCAAGACTGACTTGGCAACATCTCGATTCTCAATGTACTTAAAGAACCGATACAGTTTTGTGCTGTAGATAaTCTGGGAGTACTCCTCGCCCATTTGTGGTGGGTATTCTTCGTCCCAGTCCACAACATCATCATCAGTCAGCACAACTACATGGCACTCCCTCTCTCCACTCTGGGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282752 lncRNA downstream 71932 26509250 ~ 26514290 (-) True G208356
TU282738 lncRNA downstream 114640 26471223 ~ 26471582 (-) True G208344
TU282718 lncRNA downstream 167774 26417721 ~ 26418448 (-) True G208329
TU282696 lncRNA downstream 223859 26362086 ~ 26362363 (-) True G208307
TU282411 lncRNA downstream 305186 26280447 ~ 26281036 (-) True G208070
TU282793 lncRNA upstream 43763 26632153 ~ 26635540 (-) True G208386
TU282797 lncRNA upstream 57282 26645672 ~ 26645939 (-) True G208390
TU282799 lncRNA upstream 60087 26648477 ~ 26648687 (-) True G208392
TU282803 lncRNA upstream 68099 26656489 ~ 26657416 (-) True G208395
TU282832 lncRNA upstream 201250 26789640 ~ 27220851 (-) True G208417
XM_022684343.1 mRNA downstream 339801 26244248 ~ 26246421 (-) True LOC111195836
XM_022684342.1 mRNA downstream 480318 26103487 ~ 26105904 (-) False LOC111195835
XM_022684340.1 mRNA downstream 486395 26096805 ~ 26099827 (-) True LOC111195834
XM_022684393.1 mRNA downstream 491031 26092170 ~ 26095191 (-) True LOC111195867
XM_022683899.1 mRNA downstream 497807 26086651 ~ 26088415 (-) True LOC111195761
XM_022683916.1 mRNA upstream 25472 26613862 ~ 26640223 (-) True LOC103031232
XM_022684351.1 mRNA upstream 85216 26673606 ~ 26715253 (-) True cep290
XM_022683919.1 mRNA upstream 204372 26792762 ~ 26815459 (-) True kitlg
XM_022684352.1 mRNA upstream 357904 26946294 ~ 26949370 (-) True LOC111195856
XM_022684353.1 mRNA upstream 363299 26951689 ~ 26953473 (-) True LOC111195857
TU282385 other downstream 373381 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 373453 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 593728 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 648190 25919220 ~ 25938032 (-) True LOC111195756
TU282223 other downstream 877912 25655977 ~ 25708310 (-) False G207940
TU282801 other upstream 67053 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 557646 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 1670914 28259304 ~ 28268342 (-) False wwp2
TU283796 other upstream 3435571 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 3574067 30162457 ~ 30162907 (-) False G209127

Expression Profile