RNA id: TU282793


Basic Information

Item Value
RNA id TU282793
length 1861
lncRNA type intronic
GC content 0.38
exon number 2
gene id G208386
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26632153 ~ 26635540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattattattattattattattattattattataaatggaCTTTGAGGTTCCCCACACTTTTACCAATCAGTTATTCATTTAAAACTTGTGGACGCACTCATACATTCGGTTAAGCTGGGATTTTAACTATtgctttaaaattataaatttgtATATAATAGATTTCAGAACCAATTTCatactttttacatttgtttattgTGGAAATTTGCATTGAAAATGTgattacaaacaaacaatgtaGCCAACACACTTTGATCTTTTTATTTCTGCGTCAATCTGAACAGAACAGATTGTTCATTCTTTCACTGCTCTTTTGCTCCTCCTCTTCCCTGTCCCTCAAAACCTCTTTACTGAGCTCTTGCTCATCGTTCCTTCAGGTTTTCAGCAGCACTCTCTCTTGGCCTTCTAGCAGTCCTAAATCTGAGAGAAAGTAATAGCAGTCAAAACAACATTTCAGCAAAAGTGTGTTTGACTTGCATAATTATTCATTTCACCTTAATCACATTAGCACAGCGATGCATTGCATCATCAGTGACTTGTTGGTACTTCGTGTGAATACTGTTATTCATAACAATGTGAATTACTATTAGGGTTGCACCGATACTGGCACTTACACACAGTATCGGCCAATACCATTTCTGGGTTTGGAATGcggtagtaaaaaaaaagcggGGTAAATAGCGGGGGTAGAACATACAGACAAAACGGCCAAGGCTTCAGACAGCCCTTACCATGCATAGCACATTTATTCTGTTCAAAGCGTTTCAGTAACAGTAAAGAACAATGAAAGTTCTTGACCCTGTATTAGAGTTTAACTGAAAAGCTGCAATGGGATGTAGAGAGGTGGATTTTGgatcatgttttttgtttgtgttaattGAGGGCCTGAAGGAATATTCTATTTGAGTGAATTTAGATGGTGCTTTCACATTTTCTAACACTTTCTGCTTGTTATCTAAACGTGCCCTTTATCGCATTACTTCCAAGGTCCAAGGCTTCCGGACGGCCAGATGTCTGATGAAATATTATAAGGTGTATACTTTATATTAATCGTAATATTAAAGTACTTACAGAAAGTGATGAAGAGTTGCTATGAAAACATGTATCAACATGTCCTCCTGAAGCCACTGCTGCCTCAAATGATTATCAgcttttttcaataatattgtatgttttgcattgcattgcattcaGTGTAAGGTGGTCAGTCGGGTTTGTGTTCTGGCACTCCAataaaatcaaccgtgtttTATATTATCTCAAGTCTTGAGACTCGGCTTAGGCAAATagtgacgtgaacaatgtcaacaaccaatacaACCTACAGGTGACTGTTTacaaacaattttaaaaagaacacattttgcagttaataggttatatggttcttactttaatatgtacagtattttaaacacaggtagcactttaaagtcattatatttaaagttattttattttgcactactttgtcttattgtgcattgttgtttttgatacaaacaagttaatacaaggttgtagcaaaaTGCCTGCTGAGCATGTAACCATGTTAAGCCTGTAGCTGAGCCTGCAGCTGAGCATGTAACCATGTTAAGCCTGTAGCTGAGCCTGTAGCTGAGCATGTAACCATGTTAAGCCTGTAGCTGAGCCTGTAGCTGAGCATGTAACCATGTTAAGCCTGTAGCTGAGCCTGTAGCTGAGCATGTAACCATGTTAAGCCTGTAGCTGAGCCTGTAGCTGAGCATGTAACCATGTTCAGCCTGTAGCTGAGCCTGTAGCTGAGCATGTAACCATTGTTGAGCCTGTAGCTGAGCATGTAACCATTGttgagcctgtagctgggcatgTAACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282754 lncRNA downstream 43763 26586222 ~ 26588390 (-) True G208357
TU282752 lncRNA downstream 117863 26509250 ~ 26514290 (-) True G208356
TU282738 lncRNA downstream 160571 26471223 ~ 26471582 (-) True G208344
TU282718 lncRNA downstream 213705 26417721 ~ 26418448 (-) True G208329
TU282696 lncRNA downstream 269790 26362086 ~ 26362363 (-) True G208307
TU282797 lncRNA upstream 10132 26645672 ~ 26645939 (-) True G208390
TU282799 lncRNA upstream 12937 26648477 ~ 26648687 (-) True G208392
TU282803 lncRNA upstream 20949 26656489 ~ 26657416 (-) True G208395
TU282832 lncRNA upstream 154100 26789640 ~ 27220851 (-) True G208417
TU282861 lncRNA upstream 204749 26840289 ~ 26871460 (-) True G208438
XM_022684343.1 mRNA downstream 385732 26244248 ~ 26246421 (-) True LOC111195836
XM_022684342.1 mRNA downstream 526249 26103487 ~ 26105904 (-) False LOC111195835
XM_022684340.1 mRNA downstream 532326 26096805 ~ 26099827 (-) True LOC111195834
XM_022684393.1 mRNA downstream 536962 26092170 ~ 26095191 (-) True LOC111195867
XM_022683899.1 mRNA downstream 543738 26086651 ~ 26088415 (-) True LOC111195761
XM_022684351.1 mRNA upstream 38066 26673606 ~ 26715253 (-) True cep290
XM_022683919.1 mRNA upstream 157222 26792762 ~ 26815459 (-) True kitlg
XM_022684352.1 mRNA upstream 310754 26946294 ~ 26949370 (-) True LOC111195856
XM_022684353.1 mRNA upstream 316149 26951689 ~ 26953473 (-) True LOC111195857
XM_022684354.1 mRNA upstream 390954 27026494 ~ 27233590 (-) True LOC103031696
TU282385 other downstream 419312 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 419384 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 639659 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 694121 25919220 ~ 25938032 (-) True LOC111195756
TU282223 other downstream 923843 25655977 ~ 25708310 (-) False G207940
TU282801 other upstream 19903 26655443 ~ 26656184 (-) True G208394
XR_002651797.1 other upstream 510496 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 1623764 28259304 ~ 28268342 (-) False wwp2
TU283796 other upstream 3388421 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 3526917 30162457 ~ 30162907 (-) False G209127

Expression Profile