RNA id: TU282801


Basic Information

Item Value
RNA id TU282801
length 530
RNA type TUCP
GC content 0.46
exon number 2
gene id G208394
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26655443 ~ 26656184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTAACTGTGTAGTACCtacaatatacattttgtttatttgtcatAAGAAGAGGTATCACAACCTTTTGAGAAGCAAAGAGCTTTGTGTGCAGTGCAAAAATATCCACATGTAAACTTAACAAAACCAGAATAAATGTCTAACAGTGTTCTCTGGCCCAGGGGATATCTGCCTGCATGTTCTGGACCAGGCACCCGGTGTGTTCTATTTGAGTTCTCCATCTGGCTTCATGCTAAAAGGCTCCAGACGTTCACCCTCAGGCAGCAGATTGTTGAGTCGCTCCATCAGAGGAACGGTCTGGTCAATGCCCATCTGGATTCGCCGCAGAATCATGGACATCTCGTTCACCTTCTGGATCTGCTCTGCATACTTGGCGTATCGCTTCTGTCTCTCCTGCATGATGCTGAAAAGTGTCTCCACAGACAGGTCCATCTGGAAGAAGAACAGTCAGCCTGAGCCTTATAGGAAAGTCTGTCCACACAACAGCTACGCTACCAATACTACTGATGCCCTCATGGCAGTTTCTACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282799 lncRNA downstream 6756 26648477 ~ 26648687 (-) True G208392
TU282797 lncRNA downstream 9504 26645672 ~ 26645939 (-) True G208390
TU282793 lncRNA downstream 19903 26632153 ~ 26635540 (-) True G208386
TU282754 lncRNA downstream 67053 26586222 ~ 26588390 (-) True G208357
TU282752 lncRNA downstream 141153 26509250 ~ 26514290 (-) True G208356
TU282803 lncRNA upstream 305 26656489 ~ 26657416 (-) True G208395
TU282832 lncRNA upstream 133456 26789640 ~ 27220851 (-) True G208417
TU282861 lncRNA upstream 184105 26840289 ~ 26871460 (-) True G208438
TU282869 lncRNA upstream 203227 26859411 ~ 26863216 (-) True G208445
TU282870 lncRNA upstream 205457 26861641 ~ 26881461 (-) True G208446
XM_022683916.1 mRNA downstream 15220 26613862 ~ 26640223 (-) True LOC103031232
XM_022684343.1 mRNA downstream 409022 26244248 ~ 26246421 (-) True LOC111195836
XM_022684342.1 mRNA downstream 549539 26103487 ~ 26105904 (-) False LOC111195835
XM_022684340.1 mRNA downstream 555616 26096805 ~ 26099827 (-) True LOC111195834
XM_022684393.1 mRNA downstream 560252 26092170 ~ 26095191 (-) True LOC111195867
XM_022684351.1 mRNA upstream 17422 26673606 ~ 26715253 (-) True cep290
XM_022683919.1 mRNA upstream 136578 26792762 ~ 26815459 (-) True kitlg
XM_022684352.1 mRNA upstream 290110 26946294 ~ 26949370 (-) True LOC111195856
XM_022684353.1 mRNA upstream 295505 26951689 ~ 26953473 (-) True LOC111195857
XM_022684354.1 mRNA upstream 370310 27026494 ~ 27233590 (-) True LOC103031696
TU282385 other downstream 442602 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 442674 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 662949 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 717411 25919220 ~ 25938032 (-) True LOC111195756
TU282224 other downstream 947133 25648624 ~ 25708310 (-) False G207940
XR_002651797.1 other upstream 489852 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 1603120 28259304 ~ 28268342 (-) False wwp2
TU283796 other upstream 3367777 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 3506273 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 3506273 30162457 ~ 30162973 (-) True G209127

Expression Profile