RNA id: TU282861


Basic Information

Item Value
RNA id TU282861
length 632
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G208438
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26840289 ~ 26871460 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGTGTGGGGGAACCTGCAGCGgcttcaaagcggggggtgacgcacacacacagatagtgccacgatgttccattctggaagaacacagtcaaggccaaacactagtggtccagtcagacacgtgaaacttgagtactaacacgtgaaattatgcatgctaacatgagatgattttagcaacgcctcatcaacaggtttcacgtcatttggggtataaaacatggagtcagatcagaggagggtcagaacttatgctgggacggctgttagacggtcttttcatgtgtgggttctcctgaatattcagcactttgtaataaatacttggtttgctttcaacttcactccacctgtctgactctctctatcaaacgaacacgcaggggagttgtaccccggacgagaggtggggggtagcccacctttcattttcttttctacaacaatttGGTGACCCCGACCTCTGAACGAGTCTGACGAAGGACAGCATCCGGCACTGATCCACTCACGGCCGAACTTAAAAAATCAGGTAAGCAGAGCCGGTTTAATCAAAGTCTGCATATTGGCTGTTTCAAATTTGAGTGGAGCGGCTGTCGGGCTGCTGTCCGGAGGGGAGcagacagcatacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282803 lncRNA downstream 182873 26656489 ~ 26657416 (-) True G208395
TU282799 lncRNA downstream 191602 26648477 ~ 26648687 (-) True G208392
TU282797 lncRNA downstream 194350 26645672 ~ 26645939 (-) True G208390
TU282793 lncRNA downstream 204749 26632153 ~ 26635540 (-) True G208386
TU282754 lncRNA downstream 251899 26586222 ~ 26588390 (-) True G208357
TU282874 lncRNA upstream 12044 26883504 ~ 26892257 (-) True G208448
TU282886 lncRNA upstream 14016 26885476 ~ 26894050 (-) True G208455
TU282851 lncRNA upstream 18064 26889524 ~ 26891164 (-) True G208429
XR_002651795.1 lncRNA upstream 79454 26950914 ~ 26951324 (-) True LOC111195769
XR_002651794.1 lncRNA upstream 83307 26954767 ~ 26956450 (-) True LOC111195768
XM_022683919.1 mRNA downstream 24830 26792762 ~ 26815459 (-) True kitlg
XM_022684351.1 mRNA downstream 125036 26673606 ~ 26715253 (-) True cep290
XM_022683916.1 mRNA downstream 200066 26613862 ~ 26640223 (-) True LOC103031232
XM_022684343.1 mRNA downstream 593868 26244248 ~ 26246421 (-) True LOC111195836
XM_022684342.1 mRNA downstream 734385 26103487 ~ 26105904 (-) False LOC111195835
XM_022684352.1 mRNA upstream 74834 26946294 ~ 26949370 (-) True LOC111195856
XM_022684353.1 mRNA upstream 80229 26951689 ~ 26953473 (-) True LOC111195857
XM_022684354.1 mRNA upstream 155034 27026494 ~ 27233590 (-) True LOC103031696
XM_022683917.1 mRNA upstream 236839 27108299 ~ 27111038 (-) True LOC111195765
XM_022683924.1 mRNA upstream 1285307 28156767 ~ 28163353 (-) True tmem231
TU282801 other downstream 184105 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 627448 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 627520 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 847795 25989438 ~ 25992494 (-) True LOC111195825
TU282294 other downstream 902257 25919220 ~ 25938032 (-) True LOC111195756
XR_002651797.1 other upstream 274576 27146036 ~ 27152300 (-) True LOC111195771
TU283202 other upstream 1387844 28259304 ~ 28268342 (-) False wwp2
TU283796 other upstream 3152501 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 3290997 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 3290997 30162457 ~ 30162973 (-) True G209127

Expression Profile