RNA id: TU283202


Basic Information

Item Value
RNA id TU283202
length 619
RNA type TUCP
GC content 0.54
exon number 5
gene id wwp2
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28216395 ~ 28268369 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACCGTAAGGAGGAAGTGCTGCTAGGCTAACCTTGCTAGCGGACGGCGCGGATAAAAGGGCTGTGATGTGATGGCAGCTGCCAGTGTGAGCAGACCTGGAGGAGTCCAGAGCATAGAAAAATCCCAGCTGATCTTGAAAGtgGTGTCTGCCAGGCCGCAGTCTCCAAAGCTTCCTGGCCGTCTGTCCCGCCTCAGCTCCTTCGTGGAAGTGACAGCTGATGGCCTGACCAGCGAGACCAAGAAAACCGGGAAACGCAGCGGTCAGCACGAGCTGCAGTGGAACGAGGACCTCACACTGAATGTGACTCCTCACAGTCAGTTGGATCTGAAACTTTGGAGCTGTCACACTCTGAGAAAAGAGCTGCTGGGCAGTGCCACTATTGACCTGCTGGACACTCTCCGAACACATGATGGCAGAAtggagAATGTGGAGCTCAGTCTGGCTCTGCAGACGGAGAATAAAGGCAGTGTTGTGTCGGGTGGAGAGCTGAATGTGTGTCTGGACGGTTTGGTTGTTGATTTGGGATCCCTGCCCAACATATCAGCAACAGACAGTGAGTTTTGCCTTTCAGtgcgcacgcacgcacacacacacacacacacacacacgcatacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283194 lncRNA downstream 49345 28209395 ~ 28209959 (-) True G208640
TU283037 lncRNA downstream 123962 28135141 ~ 28135342 (-) True G208551
TU283028 lncRNA downstream 994345 27264576 ~ 27264959 (-) True G208542
TU282832 lncRNA downstream 1038453 26789640 ~ 27220851 (-) True G208417
TU283013 lncRNA downstream 1049037 27208113 ~ 27210267 (-) True G208529
TU283203 lncRNA upstream 18190 28286532 ~ 28286897 (-) True G208647
TU283205 lncRNA upstream 22267 28290609 ~ 28292211 (-) True G208649
TU283218 lncRNA upstream 88272 28356614 ~ 28357085 (-) True G208662
TU283222 lncRNA upstream 104749 28373091 ~ 28381368 (-) True G208665
TU283242 lncRNA upstream 150293 28418635 ~ 28421081 (-) True G208683
XM_022683925.1 mRNA downstream 66239 28177140 ~ 28193065 (-) True adat1
XM_022683924.1 mRNA downstream 95951 28156767 ~ 28163353 (-) True tmem231
XM_022684354.1 mRNA downstream 1025714 27026494 ~ 27233590 (-) True LOC103031696
XM_022683917.1 mRNA downstream 1148266 27108299 ~ 27111038 (-) True LOC111195765
XM_022684353.1 mRNA downstream 1305831 26951689 ~ 26953473 (-) True LOC111195857
XM_022684356.1 mRNA upstream 42524 28310866 ~ 28367957 (-) True nup160
XM_007241086.2 mRNA upstream 204179 28472521 ~ 28476854 (-) True rpl27a
XM_007241085.3 mRNA upstream 215149 28483491 ~ 28489434 (-) True psma1
XM_022683940.1 mRNA upstream 334548 28602890 ~ 28622098 (-) True LOC103040620
XM_015603785.2 mRNA upstream 393841 28662183 ~ 28663924 (-) True LOC107197304
XR_002651797.1 other downstream 1107004 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 1603120 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2046463 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 2046535 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 2266810 25989438 ~ 25992494 (-) True LOC111195825
TU283796 other upstream 1755619 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1894115 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1894115 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1933263 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 2830502 31098844 ~ 31099861 (-) True G209224

Expression Profile