RNA id: XM_022684355.1


Basic Information

Item Value
RNA id XM_022684355.1
length 3594
RNA type mRNA
GC content 0.51
exon number 25
gene id wwp2
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28216395 ~ 28268369 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCATACCGCCTCTCCTCGGTGTCACATGACCGTAAGGAGGAAGTGCTGCTAGGCTAACCTTGCTAGCGGACGGCGCGGATAAAAGGGCTGTGATGTGATGGCAGCTGCCAGTGTGAGCAGACCTGGAGGAGTCCAGAGCATAGAAAAATCCCAGCTGATCTTGAAAGtgGTGTCTGCCAGGCCGCAGTCTCCAAAGCTTCCTGGCCGTCTGTCCCGCCTCAGCTCCTTCGTGGAAGTGACAGCTGATGGCCTGACCAGCGAGACCAAGAAAACCGGGAAACGCAGCGGTCAGCACGAGCTGCAGTGGAACGAGGACCTCACACTGAATGTGACTCCTCACAGTCAGTTGGATCTGAAACTTTGGAGCTGTCACACTCTGAGAAAAGAGCTGCTGGGCAGTGCCACTATTGACCTGCTGGACACTCTCCGAACACATGATGGCAGAAtggagAATGTGGAGCTCAGTCTGGCTCTGCAGACGGAGAATAAAGGCAGTGTTGTGTCGGGTGGAGAGCTGAATGTGTGTCTGGACGGTTTGGTTGTTGATTTGGGATCCCTGCCCAACATATCAGCAACAGACAGTGAGTTTTGCCTTTCAGtgcgcacgcacgcacacacacacacacacacacacacgcatacacacatacacaaacacacacacacacacacacacaccaaatcaGTGTGTTTTGTTAAGGGGCTGGTGGATGCACTTCACTGTTGTAGAAAGACAGGAAGCTCACGCTTAAAAATCTGTACCACTGAGCTCAAATTACTCTGCTGTCAAattgtgtgggtgggtggacGGACGGACTCCACCCAACGCTCAGACAGGAAGGGCTGGAAAAAGACCCTTAACTGcttgtgcaaTGCAAGCCCCCGTAACAGaacacAGAGACACTCTGCGGTTGGATCTCGTGCAGAATCTCCCAGTGGCTCCAGAGGAACAGCTCTCATCTCTAACCGAGAATTAAATGGAGAaacctcctcacacacaccccgCCACACAGgtaaaggTGAACTCCCAGTAGAGGTGTTGGAGAATGGACGTGGTAGTCTGGGCCACACCCCTCCTCCCTCATCCCCATCTCTCAGGCCTGCAGGAAATGGTGCACCTGGTCCAGACAATTTAGCCCCGCCCCCAGCAGATACAGCCCCACCCATTGCTGATGACCAACCAACAGAGCCTGTGGTGGAGTCCTTACCTGCAGGATGGGAGCAGAGGGTTTTGTCTCATGGCCGAGTTTATTACGTCGACCACAACACCAAAACCACAACCTGGGAGCGGCCCCTTCCACCAGGgtgggAGAAGCGTGTGGACCAGCGTGGGCGGTTCTACTATGTCGATCACAACACCCGGACGACCACCTGGCAGCGGCCCACTCCCGAATCGGTCAGGAACTATGAGCAGTGGCAGAGCCAGCAGAGCCAGCTACAGGGGGCCATGCACCAGTTCAACCAGAGATACCTGTACCAATCCTCTGGAGCTCCTGTTGAGAATGATCCTCTGGGTGCTCTTCCTCCAGGATGGGAGAAACGGCAGGACAATGGGCGAGTTTACTTTGTCAACCACAACACTCGAACCACACAGTGGGAAGACCCTCGAACCCaaggGATGATACAGGAGCCTCCGCTGCCCCCTGGCTGGGAGATGAAGTACACCGCTGAGGGAGTGCGATATTTTGTAGATCACAATTCACGCACCACCACCTTCAAAGACCCACGGCCAGGCTTCGAGTCTGGctcacGGCAGGGTGGCTCTCCAGGCGCGTATGACCGCAGTTTCAGATGGAAATATCACCAGTTTCGTTTCTTGTGTCATTCTAACGCTCTGCCCAGTCACGTCAAGATCTCTGTGTCGAGACAGACTCTATTTGAGGACTCATTTCAGCAGATCATGAATATGAAACCATATGATCTGCGGCGGAGACTGTACATCATCATGAGGGGGGAGGAGGGGCTGGATTACGGCGGAATAGCCAGAGAGTGGTTCTTCTTGCTGTCCCACGAGGTCCTGAACCCCATGTACTGTCTGTTTGAATACGCTGGGAAGAATAACTACTGCTTGCAAATAAACCCCGCCTCTTCCATCAACCCCGACCACTTGAACTACTTCCGCTTCATCGGCCGCTTCATCGCCATGGCATTGTACCATGGCAAGTTCATAGATACTGGCTTCACTCTGCCTTTCTACAAGCGTATGCTTAACAAGAAGCCCACCCTGAAGGATCTGGAGTCCATAGACCCTGAGTTCTACAACTCCATCATGTGGGTCAAggaGAATGATCTGGAGGAGTGTGGGGTGGAGCTGTATTTCGCGCAGGACATGGAGATGCTGGGGAAAGTTTCAACCCACTCTCTGAAAGACGACGGAGAGAACGAACTAGTCACCAGTCACAACAAGGAGGAATACATTGGTTTGCTGACAGACTGGCGGTTCACTCGGGGTGTGGAGGAGCAGACCAAAGCCTTTCTGGATGGCTTTAATGAGGTGGTGCCACTCGAGTGGCTTCGCTACTTTGATGAGAAAGAGTTAGAGCTGATGCTGTGCGGGATGCAGGAGATTGATCTTAGCGACTGGCAGAAAAACACCATCTATCGCCATTACACCAAGAACAGCAAGCAGATCCACTGGTTCTGGCAGGTGGTGAAGGAGATGGATAATGAGAAGAGGATTCGGCTGCTGCAGTTCGTCACTGGAACCTGCAGGCTGCCTGTAGGGGGCTTCGCTGAGCTGATAGGGAGCAACGGACCACAGAAATTTTGCATAGACAAAGTGGGGAAAGAGACCTGGCTGCCACGGAGCCACACCTGCTTTAACCGGCTAGACCTGCCACCCTACCGGAACCTGGAGCAGCTGAGGGAGAAGCTCTTGTTTGCCATTGAGGAGACTGAGGGCTTCGGTCAGGAATGAGGAGCCCTTTAGATTAAAGCTGGGCGAGTCAGTCTCACTCACCTGCTGGGTCAGGTCGGGGATGGGACCAGCGCAACATAAACAGTACAATAACGTAGAATTTCCCATAAACATTAGGACTATTACAGATTTTAGCACGATATTGTTGATCATTAAAGACAGTTGATTTTAAGTTTAAGGCGCAGATATGAAATTAAATGCCACCTAGAGGCCGTCTCCTCCTCACCATGGCAACACTGGAGGCTGTTTAGTTCTGTGACCCGACAGCAGGATTCAGTCTCACAGAGATGGCAGGGTATATTACTATTTATACCTTTATGCATCCCGAGAGCCAAACACAGCACCCCCTGTTGTGGAGAAGATGAACTTTTACCTGAGCAGTTAGTAAAGAATTATACAGATATATCGCAACAGTGCCGTTAAATTTCATATGCATCTTCTCTGCAGTGTCTGGGAGAGAATCTTTTTATGTGgaacagactgtgtgtgtgtgtgtgtgtgtgtgtaagagagagaaagagagctttGAACAAGATGGAGCaatgtgattttatttgatttattttttggtaaTTGTGAAACTAGGCTATGCTGTACAGAGTGGATGTACAGCAGAATTCTGTTGTGGTTTGGGAGCAAAACGTTAAACAATccatgattaaaacaatatgTACA

Function

GO:

id name namespace
GO:0060021 roof of mouth development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K05630 WWP2, AIP2; NEDD4-like E3 ubiquitin-protein ligase WWP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283194 lncRNA downstream 6436 28209395 ~ 28209959 (-) True G208640
TU283037 lncRNA downstream 81053 28135141 ~ 28135342 (-) True G208551
TU283028 lncRNA downstream 951436 27264576 ~ 27264959 (-) True G208542
TU283013 lncRNA downstream 1006128 27208113 ~ 27210267 (-) True G208529
TU283011 lncRNA downstream 1008746 27206810 ~ 27207649 (-) True G208527
TU283203 lncRNA upstream 18163 28286532 ~ 28286897 (-) True G208647
TU283205 lncRNA upstream 22240 28290609 ~ 28292211 (-) True G208649
TU283218 lncRNA upstream 88245 28356614 ~ 28357085 (-) True G208662
TU283222 lncRNA upstream 104722 28373091 ~ 28381368 (-) True G208665
TU283242 lncRNA upstream 150266 28418635 ~ 28421081 (-) True G208683
XM_022683925.1 mRNA downstream 23330 28177140 ~ 28193065 (-) True adat1
XM_022683924.1 mRNA downstream 53042 28156767 ~ 28163353 (-) True tmem231
XM_022684354.1 mRNA downstream 982805 27026494 ~ 27233590 (-) True LOC103031696
XM_022683917.1 mRNA downstream 1105357 27108299 ~ 27111038 (-) True LOC111195765
XM_022684353.1 mRNA downstream 1262922 26951689 ~ 26953473 (-) True LOC111195857
XM_022684356.1 mRNA upstream 42497 28310866 ~ 28367957 (-) True nup160
XM_007241086.2 mRNA upstream 204152 28472521 ~ 28476854 (-) True rpl27a
XM_007241085.3 mRNA upstream 215122 28483491 ~ 28489434 (-) True psma1
XM_022683940.1 mRNA upstream 334521 28602890 ~ 28622098 (-) True LOC103040620
XM_015603785.2 mRNA upstream 393814 28662183 ~ 28663924 (-) True LOC107197304
XR_002651797.1 other downstream 1064095 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 1560211 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2003554 26212058 ~ 26212841 (-) False G208046
TU282386 other downstream 2003626 26212058 ~ 26212769 (-) True G208046
TU282304 other downstream 2223901 25989438 ~ 25992494 (-) True LOC111195825
TU283796 other upstream 1755592 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1894088 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1894088 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1933236 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 2830475 31098844 ~ 31099861 (-) True G209224

Expression Profile