RNA id: XM_022684357.1


Basic Information

Item Value
RNA id XM_022684357.1
length 8745
RNA type mRNA
GC content 0.47
exon number 23
gene id lrp5
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28783083 ~ 28860774 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGTCAGAACCCGTTTCCGCTGTCATTCCCTGTAGGAGCCACACAGAGAGCGCGGTCCTGTGTTTCTCTCGGACGGAATAAAAGTACTTTCGCGGTTCCAAGGCGGACTAAAAAGTTGCTTTTGGACTTTTCTGACCCGCCAGCCACCCGAAACATGGATTTGAAGCCGCGCAGCTGAAGCGAGGACGGCCCGAGATGGAGCTTTTATTCgcgcagctgctgctgctgagctgCGGTGTGACGGTGCTGTGCGGTTCTCCTCTTCTGTTGTTCGCTAACCGGCGGGATGTGCGATTAGTGGACGCGGAGGCAGGCCGGGCAGAGTCAGCAGTGGTGGTCAGCGACCTGGAGGACGCAGCGGCCGTTGACTTTCTGTTCAGCGAAGGACTAATCTTCTGGACTGATGTCAGCGAGGAGGCCATCAAACAAACATACTACAACCAGACCACCAACTCGGTGAAGGAGGCGACGCTGGGCTGTGGTCAGACAGTGGTGGTCTCCGGGCTGGACTCTCCTGATGGACTGGCGTGCGATTGGCTTGGCCGGAAGCTTTACTGGACCGACTCTGAAACAAATCGGATTGAAGTGGCCAATCTGGACGGAACCTCGCGGAAAGTTTTGTTTTGGCAAGATCTCGACCAACCGAGGGCCATCGCACTGAACCCCCAGCAAAGgtaTATGTACTGGACAGACTGGGGTGAGGAACCACGGATAGAGCGAGCAGGAATGGATGGAAGCAGCAGGAGGGTTATAGTGGAGGAGGAGATCTACTGGCCGAACGGACTGACCATTGACCTGGAGGAACAGAAACTGTACTGGGCTGATGCCAAACTCAGCTTCATTCACAGAGCTAACCTGGATGGTACAGCACGAGAGACCGTCGTGGAGGGGACGCTGACCCACCCTTTTGCGCTCACTCTGTTTGAGGAGACTCTGTACTGGACAGACTGGCAGACACGCTCCATTCACGCCTGCAACAAACACACCGGCGACAACCGCAGAGAGATCCTCAACGGCATCTACTCGCCCATGGACATCCAGGTGCTCGGCCAGGAGAGGCAGCCCTATATTCACACCCCCTGCAGTGACGATAATGGTGGCTGTTCTCACCTGTGCCTGCTCTCCCCCTCGCCACCTTTCTACAGCTGCGCCTGCCCAACTGGTGTCAAACTCCGCGAAGACGGCAAGACCTGCAGACCAGgggcTGAACAGGTGCTGCTTTTAGCACGTCGGACGGACCTGCGTCGGATCTCTCTGGACTTACCGGACTTTACAGACATCGTCCTGCAGGTCAGTGACATCCGCCATGCCATTGCCATCGACTACGACCCTGTGGAAGGTTACGTTTACTGGACGGATGACGAGGTTAAAGCAATCCGGCGAGCACGGCTAGACGGCACCGAGGCCCAGACGCTCATCACTACGGAGATAAATCACCCAGATGGCATTGCTGTGGACTGGGTGGCACGGAACCTTTACTGGACCGACACTGGCACCGACCGCATCGAAGTCACTCGGCTCAATGGCACATCCCGCCGTGTCCTCATATCAGAGCGCCTCAGCGAACCCAGGGCCATCGTCCTCGACCCCATACACGGCTACATGTACTGGACTGACTGGGGAGAGAAGCCAAAGATTGAGCGTGCCAACCTGGACGGGTCAGAGCGCGTGGTGCTGGTGAACTCGTCTCTGGGATGGCCAAATGGATTAGCACTGGATTACGCTACTGGAAAACTGTATTGGGGCGATGCCAAGACGGACAAGATCGAGgtgatAAACATGGACGGGTCTAACCGGATGGTTCTGTTGGAGGACAAACTGCCCCATATCTTTGGCTTCACTCTGCTGGGGGATTATATCTACTGGAGTGACTGGCAGCGCAGGAGCATCGAGAGGGTCCACACCAGTAAAGCTGTGCGAGAGGTCATTGTTGAGCAGCTTCCTGATCTGATGGGCCTCAAGGCCACGAAAGTCACCGAGACATTTGGCACTAACGGCTGTGCAGACTCTAATGGAGGCTGCAGTCACCTGTGTTTTTTCGGGCCGCGGGGTGTGTCATGTGCGTGTCCGATGGGTCTGGAGTTGCTGAGTGATCTGCACACCTGCGTCGTTCCTGAGGCCTTTCTGCTCTTTACAAACCGCGCTGAGATCCGCAGAATCTCCCTGGGCACCAACAGCAACAACGTGGCCATCCCTTTAACTGGCGTCAGGGAAGCGTCTGCACTGGACTTCGATATGGCTGAGAACAGGATCTTCTGGACTGACGTCAGCACCAAGACGATCAGCATGGCGTTTATGAATGGTAGTGGAGTGGAGACTGTCATTGAGTTCGGGCTGGACTATCCTGAGGGCATGGCTGTGGACTGGATGGGCAGAAACATATACTGGGCTGACACTGGCACGAATCGGATCGAGGTGGCACGGCTGGACGGACAGTACCGGCAGGTTTTGGTGTGCAAAGACTTGGAAAACCCACGCTCACTCGCTTTAGACCCAGCTAACGGGTATATGTACTGGGCAGAATGGGGTGGTCGGCCACGGATCGCCCGTGCTCACATGGATGGCACCAACATTGTCACTTTGGTGGATAAAGTGGGCCGAGCTAATGGCCTGACTATCGACTATGCTGATCAGCGCCTCTACTGGACGGACCTGGACACCTGCATGATTGAGTCAACCAACATGCAGGGCCTGCAGAGGGAGATAGTTGCGGATGACCTTCCTCACCCGTTTGGCCTGACGCAGTATCGGGATTATATCTACTGGACGGACTGGACGCTGCGCAGTATTGAGCGTGCGGATAAACGCAGTGGTCTGAACCGGACGGTCGTGCAGGGGCAGGTGGAGTACGTCATGGATATCCTAGTGTTCCACTCTTCTCGGCAGGACGGCTCCAACGAGTGTTCACACAATAACGGACAGTGCGCCCATCTGTGCCTGGCATCACCTTCTGGGGCACAGTGCCGCTGTGCTTCACACTACACGCTCGACCCAAACGGACGAAACTGCAGCTcTCCCTCCAGTTTTCTGTTGTTCAGTCAGCGGAGCTCGATCAGTCGGATGGTTCTGGGTGAACAGAGTCCAGACATGATTTTGCCGATCCATGTTCTGAAGAACCTGCGGGCCATTAGTTTCGACCCGCTGGAGCGTCTCATTTACTGGGTGGATGGAAGGCAGAATATCCGCCGGGCGAGAGATGATGGCTCTCagGCTGCGACTGTTGTGTCCCCCGGCCCCACTCAGCAAACCAAACAACCATACGACCTCAGCCTGGACCCCTTCAGCCGCACAGTGTACTGGACCTGCGAGACCACGAACACGATCAACATCCAGCGAATGGATGGGCAGACTGTGGGGGAGGTGCTGAGAGACGACCTGGACAAACCCCGTGCCATTCTGGTCAACGGAGAGAAAGGaaataaatttaacaaaattaaaagtagtaaaaacacctcacacactctgattttttttctgtgtaaaacaGGAGCGAATCGGATCGTCCTCCAGGACTCAAACATCCTGCAGCCGATTGGGCTGACTGTTTTAGGCGATCACCTTTACTGGATtgataaacagcagcagatgataGAACGCGTGGACAAGCGCACTGGGGACAAACGGACACGGATTCAGGGACGGATCCAGTACCTAACCGGCATCCACGCTGTGGAGTACATGGAGCCAGAGGAGTTTGCTTCTCACCCCTGTTCCCGTGACAATGGAGGCTGCTCTCACATCTGCATCGCTAAAGGAGACGGGACTCCCCGCTGTTCGTGCCCTATGCACCTGGTGCTGCTGCAGAACCTGCTCAGCTGTGGAGAGCCACCAACCTGCTCCAGTGAGCAGTTCACCTGCGCCACAGGTGAGATTGACTGCATCCCCATGGCCTGGCGCTGTGACGGCATCGCTGAGTGTGCCGACAAGAGTGACGAGATGAACTGCCCCATGTGCTCCGACTTGCAGTTCCAGTGTGATAAACACCAGTGTGTGGATGCTCAGCTGCGCTGCAATGGAGAGCCAGACTGCGCAGACAGCTCGGATGAAAAGGACTGCGACACTATCTGCATGCCCAACCAGTTCCGCTGCAGCAATAATAAGTGTATTCTGAAGAAGCAGCAGTGTGACTCGTATTCTGACTGTATGGATGGATCAGATGAGGTTTTCTGTGattTCCCACCCTCGCAGAATGATCAGCGGCACACGAACACTATTGGCCCGGTCATTGGCATCATCCTGTCCGTGTTTGTTTTGGGCGGGATGTGTTTCGTGTGTCAGCGTGTGGTGTGTCGACGCTACAAAGGTCAGAACGGAGGATTCCCCCATGATTACATCAGTGGAACCCCCCATGTCCCCCTTAACTTCATCGCCCCCACCAACTCTCAGCATGGCACGTTCACAGgcTGTGGAAAGTCTATGATGAGTTCAATGAGTCTGatgggcagcagcagcagtggagcGCCGCTCTATGATCGTAATCATGTAACCGGGGCttcctccagcagctcctccagcaCTAAAGCAAACTTCTACCCACAGaTCCTGAATCCTCCTCCATCTCCAGCGACAGATCGTTctctctacaacactgagatcTTCTACTCTTCTAACAGCCCCTCCACCACCAGGTCATACAGGCCGTATGTGATGCGTGGCGTGGCCCCGCCCACCACGCCCTGCAGCACGGACGTGTGTGACAGTGACTACACCACCAGTCGCTGGAAGAGCAACAAATACTACATGGACCTGAACTCAGACTCTGATCCGTACCCGCCCCCGCCCACCCCCCGCAGCCAGTACATGTCTGCAGAGGAGAGCTGCCCCCCCTCTCCCTCCACAGAGCGCAGCTACTTCCACCTGTGCCCTCCACCCCCCTCGCCCTGCACGGACTCATCCTGACCCCTCCTACACCCGCCCTGCACAGACTCATCCTGACCCCACCACTGTCCCGGACTCCTCAGTGGCTGAACTATACTGTAGTGTTCGCGTCCTGCACACGGTCATTCCTACAGACTGCAGTATCCCACCGGAGATGACttctattgttttaaattaacagaacacGTGCTGCAAAGACGGAACTTCAAATGAtggcagcagcagagagagggCGGAGTAGTAGGCTAATTAATCAGATGATAGTCAATAGAGGAATTCAATTTAGAGATAATGGTTAGTTGCAGCACTGCTGGACAACCAGAGCCATTGTGCTGCAGAGAAATGGACTCCACAGCAAAGATTTTGTCTGCAGGTATAAGAATGTGTTGCCTGCCAACGCACTCACGTGTGCACTAGGGGGCACTATTGCGTTGATCAAACCAAGAATGTACAAAAACTCTAGAACGGGACAAAAATTCTGTTGCATTTGATAACAGAGGGAGTGATGAAACAAAAGTTTAGAATGGTATTTTGTTTTGCTCCATTTTGGACCTCGTCCCAAATCCCATGGTACCACAGACACTTACCTCTTCAACCAATCAGCATTTGCTGTAGAGCACCATAGATTTGATGTAGCCGCAAATCTATGCAAAAGTATAAATCAGCCTTATATATGAACAAAGCCAGAAAGCAAAAACTGCCACGTGCATTTctacacacaacacaagcaAGCCGAGGATTCTGTGGGTAGATAAAATTCCCAGAACCTGTGATCAAGTGTACAGCGCATTGCATGGCTGGTTGAAggtttttttacagcttttatgCATGAAACATAATCATTTATGATTTTATATGCTTTCCCTTCGGCTTGTCTAACCACTATAGGTAAAGCCTTATGTGAACAGCAGGTGGAGTTTCTTATAGCTCTTCAGCatcatgtagaaaataatacaagACAAAACCACAAATTTGAGCCTTAGGGGGTTTTAACAATTCTCTCCAGGCTTCGCACACGAACGTGTTCTTTCTCACACTGTGAACACCGCCAAGCGTCCCATTTAATCTTAATGAGACTTAAGGTccacctcagtgtatatcataATACCTACATATAGAGAGTTATACATTTCAGTGTCTCATTAAGGGTCGAATGGGATTTACCAGCTGTTGGTGAGGTTTATTCCCAACTCAACACTAAGAACAGAAAAGCACGTTTGTGGACTGAGCCTTTAAAGGATAACAGggcggagtaatacattttaaatgcttattatacaaaaatgtttaaaaaaaaacgtattatacaaaaccaaaaaaattgcCAAAACAATTTAGAGCAGAgatattgtatatatgtataattaagtaaataataatttgtcATTATGGCCGTGTGTTCTCTCGATTGTTTTGTATGTGAATACGAAACGGATCCAAGCAAAATGTTTGGCTAGTTCTGTTTACCAAAAGTGTGTTTGCTGCTATTGTACATAATCCTGTACTCTGAACCTGAATGacgaaagaaaagaaaacagttaGCAGAATCACATCTCTATATgtatagaaataaatacatataaagaaCTATATGTAACTGATCATAGGTTAATTGAAATCATACTGATGCCgattcatgtttttaaataatgttattaatCCCATAGCAGAATTTCAGCTTTCAGTCGTGTACAGAATCATATCTAAATGTTCTTGTAAAATGCCATTAATTTGAAGGAGCCTATGTAAGTGAACATGCACCACAGGCCAAACATTTGGAGGCAACACTTACTGCATGTACCAAGTTCTCTGCATAGTTCCTCTGTTActgggtttggtgtgaaattttCTGTTTTAGAGTGAGATTTGTTGGCAGTGGTGGTGAACAGATCCAGACCTCGAAAAGCTCCCTCACAGGAAATGATTACAGTGGTTTGACTGCACTGCCTGAGAGACTGATTTTAAAAATTTGAGTATAAAGTGCTTTTAAATCACATCAGTAAAATATGTTCTAAGGgtctcatttaaaaaacattgatcACTTTAGATCAGGACCCAAATTTAGCCCACCAGAGACACCCTAAACCCAGGCTATTACATAGAAATATCATGCATTTCTTTATGCCTTTTTTACATTCCATTATCCCATTTCaaataatttagtaaaaaaaacttaataaaagttatgttgtaaaaaatgaagaaaaaaaatggtgggcaacatggtaaaaaaattgAATGATACAAAAAAGACAAAGTGTACTGTTCTAAATCTATCACTATATtgatacaatattatattacacACCACCCATTACAGaatctaattttaaaagtatttgaaacctttatttggatttatttgGACTCACAGCCACATTACTCCTCCCCTCTGTGCAGAAGACTTCCCTGCATCCCTGCTCTAAACTAATCAGACTaaagctgttttattttcattcattataCTGAAATAAGACTGAAGCAGCTTAAAGTAGTTCTTTTACATTTGCCTCCATGCATTTGGCctgtgcgagtgtgtgcgcGTGAGTGTGCGTGcgtgagcgagcgagcgagtgagtgagagtctTAGCTGTGAGCCAGCAGTGTTTCTGGCATTAATGCACATACTGTTCAAACTGCCATAAAAGGCACCGGCTCGCTCTGCAGGAGCAGCAAACACGACGTTGCCAAAATCTCCAGTGATGACCTTAGGAGACCTGTTggactttttattatattttaggttAAACTAAgctatatttcagtgttttgtcctCGCCTGaattttttactcagatttttattgttttgttttttgtacagACATCAGacatcaattttttattttcactccccccccccccaaagtTGCTGTTATtgcttttactttgttttttcatCTTGTGCTAATCCAGGTAGgattgattttgtttttgttttgtgtcaAAGTTGAGCACTTAGAGGATTTTCTGCTGATGTGTCTAGACACAACAGTTCAGAGttttaatatttctttaaagTGAAAGTTTGAAACATACAGTATCAGAAGCCACATATGCAGGTCTGTTATGgttactgtatttaaattttttccaaACATACTATAATTTTAGCTGAATCACTTCCACACAACCAGATTAAAGGTGAAAAGGTCTGTCCAAACTTTATTAAACCAGTTAAGCAGTAAGATTTGTGTAACTTTGTGTACATTTAACCTAATCTTTATCTGCATTTGTAGCCTGAGATTGATTACCCCGGACAATGACAaaaatttttggatttttttttttttttttcataaatataatttatttttattttttggtgagTTGATGCATGAGCATTATTAATAAGATAAACATGTTGTTTACATTTGTACTTgatttaagtaaaaatattttgccAAAAAGGTAATTTTACAAGATAACTTGAaacaagtacaaatactttaaaacagtCCAATAATATTCTTAATACAacctgaaaatgaaaaatattcagtatatttactgttttctaGATGATTTCACTTGCCACAATTTTTGCTTGTAAATTTATCCagataaataatgtttaatggATTATGTCCTTTTTATATCCCACTAGAGCTCGAAGCTGTAGATGTTTATTCAAACCAGCTCCACATCTGCAACATCAAGGCTGTGTAAATAAGCCCTGAATGTGACTGAAATAAGGTTTTGTTGATCGTTTAGTGTCCCGGTCAGCAGCTGTCTGTGAACCCTAAAGTTTTGTGCCGCAAGCCCAACACACTTTCAGTTCGGTACAAATGCCTCATTTAATGCACACTTCTGACAATTTTTGTATCAaaagcatttttatatataataaaggttCTATTTTAAGGAA

Function

GO: NA

KEGG:

id description
K03068 LRP5_6; low density lipoprotein receptor-related protein 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283459 lncRNA downstream 14053 28766765 ~ 28769030 (-) True G208843
TU283458 lncRNA downstream 16388 28765683 ~ 28766695 (-) False G208843
TU283440 lncRNA downstream 67451 28715310 ~ 28715632 (-) True G208827
TU283364 lncRNA downstream 87383 28662211 ~ 28695700 (-) False LOC107197304
TU283490 lncRNA upstream 19210 28879984 ~ 28885542 (-) True G208861
TU283499 lncRNA upstream 53386 28914160 ~ 28923330 (-) True G208865
TU283540 lncRNA upstream 74060 28934834 ~ 28937449 (-) True G208899
TU283569 lncRNA upstream 202725 29063499 ~ 29068424 (-) True G208921
TU283588 lncRNA upstream 309905 29170679 ~ 29170900 (-) True G208939
XM_022683950.1 mRNA downstream 40490 28735186 ~ 28742593 (-) True LOC111195773
XM_022683948.1 mRNA downstream 81508 28694166 ~ 28701575 (-) True gal
XM_022683947.1 mRNA downstream 81924 28694166 ~ 28701159 (-) False gal
XM_022683949.1 mRNA downstream 81935 28694166 ~ 28701148 (-) False gal
XM_022683945.1 mRNA downstream 99581 28668730 ~ 28683502 (-) False LOC103041235
XM_022683968.1 mRNA upstream 11066 28871840 ~ 28888885 (-) False LOC103034116
XM_022683966.1 mRNA upstream 11066 28871840 ~ 28888885 (-) True LOC103034116
XM_022683967.1 mRNA upstream 11066 28871840 ~ 28888826 (-) False LOC103034116
XM_015603523.2 mRNA upstream 158446 29019220 ~ 29020927 (-) True LOC107197240
XM_022683975.1 mRNA upstream 183201 29043975 ~ 29157568 (-) False LOC103039163
TU283202 other downstream 514741 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 1630783 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 2126899 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2570242 26212058 ~ 26212841 (-) False G208046
TU283796 other upstream 1163187 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1301683 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1301683 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1340831 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 2238070 31098844 ~ 31099861 (-) True G209224

Expression Profile