RNA id: TU283787


Basic Information

Item Value
RNA id TU283787
length 1413
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G209082
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 29883646 ~ 29885174 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactgacaaaaaaaaaaTctacagtcagtcacccctagtagtgatatgagggacAACAACAGCTCAGTGTTGTGTATTGCAATTTTTATGGCAGGGCTTCCAACTGgctttttccagcaggataatgctctcacacacacagcaagggatAGCCAGAAATGTCTCAAACAGCGTGCAACACTTCCTTGGACTGCCATGTTGCCAGGTTTTTCAGCAATCAAACATTTATTGGACCAGCTTTGGCAATCTATGAGTGTGTGGGATCAACAGGCCctgtgtcctcatatggggacattacatttctactTCTCTGCACCGACGTTGACACattggcctcatatggagacacgtATAGtatagtggtcacatgacaacattatacTCAACTGATTGAAAAGAAGATgacgggaatcccagtcaaaagtttgaaaccAGTTTAATTACCATCGGTAgacagctaaaaaaaatttttttctgATCTCAAATGGCAAGACTTAATTttttcaatattaaaaaatacaaaatttagCTTTTATACTTGCTAGGTCCTACTAATCCCAAAAAagctacaagaaaaaaaaatgcacattaagCAAAAGTCCAGGTCTACGGAGGTTAAGCGAACTAATATTGCTATTAATGAATCGCATGGTATATGAACCACTCTGGTATCACTTTCTGAAAGCAGGTTCCACAATTCAAGCCCTCAGTTACAAAGAACAGTTaacaatcactacacacccaatcacTCTCAGGATTATTCAAAACAAGATACACTGCCTGACAAAGGTTTGGAGACCAACTGCAAATTAGAAAGGTTTAGTAATGATAAAGGATGaacaaatgtactgtattgggacacctgtttattcttagtttttcttgcttttgttggagcaaCTGTTTCCACTGTTCTATAAAGGCTTTTAATCAGCactctcaagttttgaagtttggtgGGAGTGGCATTGGTGGGGGGAGGTTGTGGGTGGTGTTGCCGCCGATCTCCTTCAGTTGTTCACcgacgtgtgtttcagaacttttgaATCGGACCGTTCTTtgcgcctgacactctggctaaaactccaccctctttgactaggcctgcctaacaacagagcgatctatattctgattggctcaacgagagtacattataatatacagccgatggattggcaagcgtgacaaataccatgtgtggcttgtgagcgtgtgaactcgctgagatgcgtgagacttgagaacgcTGCTTTTAATAGATTCTAATTAGTTCCCCAACTCATTCAAACTTACTagcattgccaatagaatatgacATGAAAACCTTGGCATCTTGCCAATGTCAGACAAGAGACTAGATTAGTGAACTGTGTAGCACTGAAACTGTTCTTTGGGATGCTGAGATTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283770 lncRNA downstream 170408 29709123 ~ 29713238 (-) True G209067
XR_002651801.1 lncRNA downstream 236071 29646866 ~ 29647575 (-) True LOC111195775
TU283662 lncRNA downstream 524333 29356131 ~ 29359313 (-) True G208977
TU283660 lncRNA downstream 529891 29348810 ~ 29353755 (-) True G208976
TU283588 lncRNA downstream 712746 29170679 ~ 29170900 (-) True G208939
TU283795 lncRNA upstream 136925 30022099 ~ 30022721 (-) True G209089
TU283810 lncRNA upstream 243004 30128178 ~ 30128661 (-) True G209104
TU283828 lncRNA upstream 269900 30155074 ~ 30156513 (-) True G209121
TU283831 lncRNA upstream 274703 30159877 ~ 30160330 (-) True G209124
XR_002651856.1 lncRNA upstream 438388 30323562 ~ 30327730 (-) True LOC111195840
XM_022683978.1 mRNA downstream 411766 29434479 ~ 29471880 (-) False LOC103042757
XM_022683977.1 mRNA downstream 411766 29434479 ~ 29471880 (-) True LOC103042757
XM_022683975.1 mRNA downstream 726078 29043975 ~ 29157568 (-) False LOC103039163
XM_022684361.1 mRNA upstream 175974 30061148 ~ 30110040 (-) True LOC103023888
XM_022683985.1 mRNA upstream 282927 30168101 ~ 30195378 (-) False LOC103038627
XM_022683981.1 mRNA upstream 282927 30168101 ~ 30195378 (-) True LOC103038627
XM_022683984.1 mRNA upstream 285080 30170254 ~ 30195378 (-) False LOC103038627
XM_022683982.1 mRNA upstream 285080 30170254 ~ 30195378 (-) False LOC103038627
TU283202 other downstream 1615304 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 2731346 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 3227462 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 3670805 26212058 ~ 26212841 (-) False G208046
TU283796 other upstream 138787 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 277283 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 277283 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 316431 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 1213670 31098844 ~ 31099861 (-) True G209224

Expression Profile