RNA id: TU283818


Basic Information

Item Value
RNA id TU283818
length 941
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC103038932
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 30201531 ~ 30318216 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agatatttagagagGATGTGATGGTGGTAGGCGAGCCCACCCTGATGGGCGGGGAGTTTGGTGACGAGGACGAGCGTCTGATCACGCGGCTGGAGAACACGCAGTACGACGCAACTAACGGCCTGGACGATGACGACGACTTCACCAGCTCGCCGGCGCTCGGCAACAACAGCCCGTGGGCCAGCAAGCCGCCCACAGGCCAGGACAGCAAACCCGAGAGCACGGCCTCCCAGCCCTCCCAGTAAAGAGACACTGCCTCCAGTGATGCCGCTGCACCACCAGGGTGCCCtatatctctcactctctctttcttttattctttctttctattaacccttttttctactgagaAGGTGCCAGAACATGTACTGATTCTTGGAAACCAGAGAAACATTTCCATTGGTTTGACAGCCGTGCAATAACTGCTGGAGATCCTAAAAAGTTAAAACATGTTATCATTAAATTTAAGGATGTGTCCCAATGATGTACTACTAGTATTGCTATTGTGGTAAGTATTATATAGAATTACACTTATATTTTTGCCTTTCCAGGGCTTCCAAGGACTACACACAATCATTTACACTCAACACAGGTGAGAACCGTCAGCCCATCGCAGGGACACAGCAGGAGAGTTTAGCGCAGTTTGGAGTATCCAACTTACCACATtaacatgtttttggactgtgggaggaaatcCAATCAGACAtgggggagaacatggaaaccgCATCCATATAGGGATTTGAACCCAGAACCCCAGCGCTGGGAAGTGGACATGCAAACCACTAAGCAACTTAGCCACCATGCCTCCTGTACTTACTGTAGTTTTACCAATTAGTATACAATTGGGACATATCGTTACTTTCAGCCTGTTAgtagtgattttatttaatgtattttgcatgttaaatagtattttttcaCCACCgctacaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283831 lncRNA downstream 41275 30159877 ~ 30160330 (-) True G209124
TU283828 lncRNA downstream 45092 30155074 ~ 30156513 (-) True G209121
TU283810 lncRNA downstream 72944 30128178 ~ 30128661 (-) True G209104
TU283795 lncRNA downstream 178884 30022099 ~ 30022721 (-) True G209089
TU283787 lncRNA downstream 316431 29883646 ~ 29885174 (-) True G209082
XR_002651856.1 lncRNA upstream 116912 30323562 ~ 30327730 (-) True LOC111195840
TU283895 lncRNA upstream 230668 30437318 ~ 30437788 (-) False G209166
TU283893 lncRNA upstream 230717 30437367 ~ 30437788 (-) True G209166
TU283908 lncRNA upstream 535776 30742426 ~ 30742669 (-) True G209177
TU283917 lncRNA upstream 549656 30756306 ~ 30757507 (-) True G209184
XM_022683985.1 mRNA downstream 6227 30168101 ~ 30195378 (-) False LOC103038627
XM_022683981.1 mRNA downstream 6227 30168101 ~ 30195378 (-) True LOC103038627
XM_022683984.1 mRNA downstream 6227 30170254 ~ 30195378 (-) False LOC103038627
XM_022683982.1 mRNA downstream 6227 30170254 ~ 30195378 (-) False LOC103038627
XM_022683983.1 mRNA downstream 6227 30170254 ~ 30195378 (-) False LOC103038627
XM_022683988.1 mRNA upstream 156643 30363293 ~ 30390245 (-) True LOC103021866
XM_022683989.1 mRNA upstream 307257 30513907 ~ 30803356 (-) True fstl5
XM_022683991.1 mRNA upstream 1047697 31254347 ~ 31260863 (-) True LOC103031457
XM_022683990.1 mRNA upstream 1057921 31264571 ~ 31266955 (-) True LOC103031775
XM_007238211.3 mRNA upstream 1070527 31277177 ~ 31282581 (-) False LOC103032100
TU283837 other downstream 38632 30162457 ~ 30162973 (-) True G209127
TU283834 other downstream 38698 30162457 ~ 30162907 (-) False G209127
TU283796 other downstream 177055 30023961 ~ 30024550 (-) True G209090
TU283202 other downstream 1933263 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 3049305 27146036 ~ 27152300 (-) True LOC111195771
TU283958 other upstream 892194 31098844 ~ 31099861 (-) True G209224
TU283995 other upstream 1067218 31273868 ~ 31274402 (-) True G209256
TU284055 other upstream 1310783 31517433 ~ 31517892 (-) True G209303
TU284258 other upstream 2748965 32955615 ~ 32956085 (-) True G209458
TU284339 other upstream 3395449 33602099 ~ 33604989 (-) True G209529

Expression Profile