RNA id: TU283831


Basic Information

Item Value
RNA id TU283831
length 454
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G209124
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 30159877 ~ 30160330 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAGTTGAGTGGTTGTTGACATACTGCTGGCATCATTTAGTGGTgcacattaggggtgggcaatattatatcgtatacaatatatcgtgacacagaaatatcatgatatttaaaatccatatcgtgataatagggctgttctgtcttaaaagtagtctattatttactgtgaagctttaggtgtatttattgtataattgttttagtttgcagtttatatgcatgcactaaatattctgcaatatttttgctgcattattttatgctatattatttattttgccacattatgattatactgttatactattatactatattcctgaaatgaatgaattattttagttttcctatatcggcaagtatatcgttatcgcaaaaatagcctgaaatatcgtgatattattttagagccatatcgcccacccctagtgcacATGCATGTAAGTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283828 lncRNA downstream 3364 30155074 ~ 30156513 (-) True G209121
TU283810 lncRNA downstream 31216 30128178 ~ 30128661 (-) True G209104
TU283795 lncRNA downstream 137156 30022099 ~ 30022721 (-) True G209089
TU283787 lncRNA downstream 274703 29883646 ~ 29885174 (-) True G209082
TU283770 lncRNA downstream 446639 29709123 ~ 29713238 (-) True G209067
XR_002651856.1 lncRNA upstream 163232 30323562 ~ 30327730 (-) True LOC111195840
TU283895 lncRNA upstream 276988 30437318 ~ 30437788 (-) False G209166
TU283893 lncRNA upstream 277037 30437367 ~ 30437788 (-) True G209166
TU283908 lncRNA upstream 582096 30742426 ~ 30742669 (-) True G209177
TU283917 lncRNA upstream 595976 30756306 ~ 30757507 (-) True G209184
XM_022684361.1 mRNA downstream 49837 30061148 ~ 30110040 (-) True LOC103023888
XM_022683978.1 mRNA downstream 687997 29434479 ~ 29471880 (-) False LOC103042757
XM_022683977.1 mRNA downstream 687997 29434479 ~ 29471880 (-) True LOC103042757
XM_022683974.1 mRNA downstream 1029604 29043975 ~ 29130273 (-) False LOC103039163
XM_022683985.1 mRNA upstream 7771 30168101 ~ 30195378 (-) False LOC103038627
XM_022683981.1 mRNA upstream 7771 30168101 ~ 30195378 (-) True LOC103038627
XM_022683984.1 mRNA upstream 9924 30170254 ~ 30195378 (-) False LOC103038627
XM_022683982.1 mRNA upstream 9924 30170254 ~ 30195378 (-) False LOC103038627
XM_022683983.1 mRNA upstream 9924 30170254 ~ 30195378 (-) False LOC103038627
TU283796 other downstream 135327 30023961 ~ 30024550 (-) True G209090
TU283202 other downstream 1891535 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 3007577 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 3503693 26655443 ~ 26656184 (-) True G208394
TU282386 other downstream 3947108 26212058 ~ 26212769 (-) True G208046
TU283834 other upstream 2127 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 2127 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 41275 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 938514 31098844 ~ 31099861 (-) True G209224
TU283995 other upstream 1113538 31273868 ~ 31274402 (-) True G209256

Expression Profile