RNA id: TU283993


Basic Information

Item Value
RNA id TU283993
length 513
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G209254
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 31271836 ~ 31272348 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttccccagggttcggtactgggacctcttctcttctcaatatacaccacctctctaggtcgggttatccgctcacatggtttttcctaccactgctttgctgacgacactcagctatacctgtcgttctcacccgatgatcactcaatctctgcatgaatatcacagtgtctctcagacatatccgcatggatgaaggaacatcacctccaactaaacctctcaaagactgaacttctggtcataccagcaaaaccttctattcaacacaactttgccataaccatcgactctctctctctctcaccgacaaaggttgctaggaacctgggtgtcatggttgatgaccagcttctcttcacgcaccatgtggcctcagttgcttgatcctgccgctttgcgctttacaacatcggaaaaattcgaccgtttctgacgcaacaggccacccaactcctggtacaagctgtggtaatctcacgcctcgactactgcaatgccgtactaactggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283972 lncRNA downstream 54688 31216615 ~ 31217148 (-) True G209236
TU283941 lncRNA downstream 251456 31020100 ~ 31020380 (-) True G209208
TU283922 lncRNA downstream 434096 30811716 ~ 30837740 (-) True G209189
TU283891 lncRNA downstream 468484 30760436 ~ 30803352 (-) False fstl5
TU283917 lncRNA downstream 514329 30756306 ~ 30757507 (-) True G209184
TU284001 lncRNA upstream 12804 31285152 ~ 31285360 (-) True G209261
TU284053 lncRNA upstream 243611 31515959 ~ 31516197 (-) True G209301
TU284056 lncRNA upstream 246684 31519032 ~ 31519276 (-) True G209304
TU284081 lncRNA upstream 473237 31745585 ~ 31745994 (-) True G209329
TU284193 lncRNA upstream 1366476 32638824 ~ 32639902 (-) False gar1
XM_022683990.1 mRNA downstream 4881 31264571 ~ 31266955 (-) True LOC103031775
XM_022683991.1 mRNA downstream 10973 31254347 ~ 31260863 (-) True LOC103031457
XM_022683989.1 mRNA downstream 468480 30513907 ~ 30803356 (-) True fstl5
XM_022683988.1 mRNA downstream 881591 30363293 ~ 30390245 (-) True LOC103021866
XM_022683987.1 mRNA downstream 953620 30201531 ~ 30318216 (-) False LOC103038932
XM_007238211.3 mRNA upstream 4829 31277177 ~ 31282581 (-) False LOC103032100
XM_022683992.1 mRNA upstream 4829 31277177 ~ 31282581 (-) True LOC103032100
XM_022684000.1 mRNA upstream 17786 31290134 ~ 31382522 (-) False rapgef2
XM_022683998.1 mRNA upstream 17786 31290134 ~ 31382522 (-) False rapgef2
XM_022684001.1 mRNA upstream 17786 31290134 ~ 31382522 (-) False rapgef2
TU283958 other downstream 171975 31098844 ~ 31099861 (-) True G209224
TU283818 other downstream 1065186 30201605 ~ 30206650 (-) False LOC103038932
TU283837 other downstream 1108863 30162457 ~ 30162973 (-) True G209127
TU283834 other downstream 1108929 30162457 ~ 30162907 (-) False G209127
TU283796 other downstream 1247286 30023961 ~ 30024550 (-) True G209090
TU283995 other upstream 1520 31273868 ~ 31274402 (-) True G209256
TU284055 other upstream 245085 31517433 ~ 31517892 (-) True G209303
TU284258 other upstream 1683267 32955615 ~ 32956085 (-) True G209458
TU284339 other upstream 2329751 33602099 ~ 33604989 (-) True G209529
TU284514 other upstream 2898419 34170767 ~ 34212849 (-) True G209640

Expression Profile