Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007245533.3 |
| length | 1381 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 7 |
| gene id | gar1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035920.1 |
| NCBI id | CM008323.1 |
| chromosome length | 47266144 |
| location | 32629294 ~ 32639929 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0001522 | pseudouridine synthesis | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0031429 | box H/ACA snoRNP complex | cellular_component |
| id | description |
|---|---|
| K11128 | GAR1, NOLA1; H/ACA ribonucleoprotein complex subunit 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU284081 | lncRNA | downstream | 883300 | 31745585 ~ 31745994 (-) | True | G209329 |
| TU284056 | lncRNA | downstream | 1110018 | 31519032 ~ 31519276 (-) | True | G209304 |
| TU284053 | lncRNA | downstream | 1113097 | 31515959 ~ 31516197 (-) | True | G209301 |
| TU284001 | lncRNA | downstream | 1343934 | 31285152 ~ 31285360 (-) | True | G209261 |
| TU283993 | lncRNA | downstream | 1356946 | 31271836 ~ 31272348 (-) | True | G209254 |
| XR_002651803.1 | lncRNA | upstream | 60132 | 32700061 ~ 32701470 (-) | True | LOC111195779 |
| XR_002651802.1 | lncRNA | upstream | 63519 | 32703448 ~ 32704069 (-) | True | LOC111195778 |
| TU284183 | lncRNA | upstream | 165370 | 32805299 ~ 32807680 (-) | False | G209406 |
| TU284181 | lncRNA | upstream | 166866 | 32806795 ~ 32807680 (-) | True | G209406 |
| TU284230 | lncRNA | upstream | 188933 | 32828862 ~ 32829063 (-) | True | G209433 |
| XM_022684003.1 | mRNA | downstream | 2718 | 32614920 ~ 32626576 (-) | False | LOC111195776 |
| XM_022684004.1 | mRNA | downstream | 3195 | 32614920 ~ 32626099 (-) | True | LOC111195776 |
| XM_007245534.2 | mRNA | downstream | 19386 | 32602209 ~ 32609908 (-) | True | LOC103043395 |
| XM_007245535.3 | mRNA | downstream | 28283 | 32592697 ~ 32601011 (-) | True | LOC103043705 |
| XM_015604856.2 | mRNA | downstream | 512730 | 32076591 ~ 32116564 (-) | False | LOC103044229 |
| XM_022684011.1 | mRNA | upstream | 1160173 | 33800102 ~ 33812322 (-) | False | grhpr |
| XM_022684009.1 | mRNA | upstream | 1160173 | 33800102 ~ 33810499 (-) | True | grhpr |
| XM_022684363.1 | mRNA | upstream | 1201058 | 33840987 ~ 33844951 (-) | True | mrpl18 |
| XM_022684346.1 | mRNA | upstream | 1213140 | 33853069 ~ 33854406 (-) | True | LOC111195843 |
| XM_007245527.3 | mRNA | upstream | 1269180 | 33909109 ~ 34001611 (-) | True | pdgfc |
| TU284055 | other | downstream | 1111402 | 31517433 ~ 31517892 (-) | True | G209303 |
| TU283995 | other | downstream | 1354892 | 31273868 ~ 31274402 (-) | True | G209256 |
| TU283958 | other | downstream | 1529433 | 31098844 ~ 31099861 (-) | True | G209224 |
| TU283818 | other | downstream | 2422644 | 30201605 ~ 30206650 (-) | False | LOC103038932 |
| TU283837 | other | downstream | 2466321 | 30162457 ~ 30162973 (-) | True | G209127 |
| TU284258 | other | upstream | 315686 | 32955615 ~ 32956085 (-) | True | G209458 |
| TU284339 | other | upstream | 962170 | 33602099 ~ 33604989 (-) | True | G209529 |
| TU284514 | other | upstream | 1530838 | 34170767 ~ 34212849 (-) | True | G209640 |
| TU284515 | other | upstream | 1530838 | 34170767 ~ 34212849 (-) | False | G209640 |
| TU284540 | other | upstream | 1594989 | 34234918 ~ 34274593 (-) | True | G209660 |
