RNA id: TU284249


Basic Information

Item Value
RNA id TU284249
length 491
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G209452
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 32953027 ~ 32953517 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGGTTGATTGgctaattaccaacacctgcttTGAACACCTTATAAGCAGCGCCAAtcagccactcggcgctggatctttgaagcttgtgagagcgaatctatgcccgaTTTTTCTCTGAGCTCTGGCTCTCTTTCCCTTCTTTCCTATCCAAGGCAAGTGCCGTTTATTTCCCTCTCGAGTTTGGTGTGGCTGTGTAGAGCTGTGAGCTCCACCGCTCTCCTCTGagtctttgtttgtgtgtgtgtgtgtgtgtggtagccgCCACGAGGCACGCGGTGTGTTCACCTTTTCTCTCCCCGCgctgttcctctcctctctggtggagcagcgtttaATCCACAAGCACCCCAGTtcacttctttgtttagtttggaagCTCTTTATTTTTACCTCGCGCCATAAGAGGTAGCCGCACTTCCCGGCTTTGTTTAcgttttctccccctctctctttcactcacgctcGGCGTGGggtttgttttccacccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284237 lncRNA downstream 66975 32885690 ~ 32886052 (-) True G209440
TU284230 lncRNA downstream 123964 32828862 ~ 32829063 (-) True G209433
TU284183 lncRNA downstream 145347 32805299 ~ 32807680 (-) False G209406
TU284181 lncRNA downstream 145347 32806795 ~ 32807680 (-) True G209406
XR_002651802.1 lncRNA downstream 248958 32703448 ~ 32704069 (-) True LOC111195778
TU284357 lncRNA upstream 795660 33749177 ~ 33749516 (-) True G209546
TU284409 lncRNA upstream 828226 33781743 ~ 33782007 (-) True G209579
TU284399 lncRNA upstream 843785 33797302 ~ 33799205 (-) True G209571
TU284406 lncRNA upstream 877703 33831220 ~ 33834676 (-) True G209576
TU284405 lncRNA upstream 881781 33835298 ~ 33838826 (-) True G209575
XM_007245533.3 mRNA downstream 313098 32629294 ~ 32639929 (-) True gar1
XM_022684003.1 mRNA downstream 326451 32614920 ~ 32626576 (-) False LOC111195776
XM_022684004.1 mRNA downstream 326928 32614920 ~ 32626099 (-) True LOC111195776
XM_007245534.2 mRNA downstream 343119 32602209 ~ 32609908 (-) True LOC103043395
XM_007245535.3 mRNA downstream 352016 32592697 ~ 32601011 (-) True LOC103043705
XM_022684011.1 mRNA upstream 846585 33800102 ~ 33812322 (-) False grhpr
XM_022684009.1 mRNA upstream 846585 33800102 ~ 33810499 (-) True grhpr
XM_022684363.1 mRNA upstream 887470 33840987 ~ 33844951 (-) True mrpl18
XM_022684346.1 mRNA upstream 899552 33853069 ~ 33854406 (-) True LOC111195843
XM_007245527.3 mRNA upstream 955592 33909109 ~ 34001611 (-) True pdgfc
TU284055 other downstream 1435135 31517433 ~ 31517892 (-) True G209303
TU283995 other downstream 1678625 31273868 ~ 31274402 (-) True G209256
TU283958 other downstream 1853166 31098844 ~ 31099861 (-) True G209224
TU283818 other downstream 2746377 30201605 ~ 30206650 (-) False LOC103038932
TU283837 other downstream 2790054 30162457 ~ 30162973 (-) True G209127
TU284258 other upstream 2098 32955615 ~ 32956085 (-) True G209458
TU284339 other upstream 648582 33602099 ~ 33604989 (-) True G209529
TU284514 other upstream 1217250 34170767 ~ 34212849 (-) True G209640
TU284515 other upstream 1217250 34170767 ~ 34212849 (-) False G209640
TU284540 other upstream 1281401 34234918 ~ 34274593 (-) True G209660

Expression Profile