RNA id: TU284405


Basic Information

Item Value
RNA id TU284405
length 2578
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G209575
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 33835298 ~ 33838826 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctttaaactTTTTACATAGAGCAATATCCACTCAAATAACCATCTGaatgattaaaatgtttctttaccACAATCTAGATGTTTGCTACAGTGAAACAACTAATTTTTGCCAATAGTGGTGAAATGCCAAGCAGGCTCTACACTATTTTTTATTCCAAATCAATTACCTAGAAAGATGGAGGGCCTTAATTATACTTTTCTGGTAAATATATAGAAGTAAAGTTAAGTGTTTCGCTTTAACAAGCTGCTTTGTTTGATCTCGCTTATAGGAAACACCTCGTGGTGTCACATTAGACACTCTATGGGTCTATGGGTTAACTTGGGCTGATTTTTATCTGGAAGCTGGTTCTACTTAAGTGGCACAAACACCATCAAGACCAGCATgttttatataacaaaaaaggaACACTGTATTGCcaaaaatacattaacaatcaaatacattctcacacacaaatACCCAAGGTACATGCTTGGTCATAAAGGCAGGCCGACAGCACATAAAGCATGCACACTGTCCAATACTCAGGGACCAAACAACACACTCAACcagaacatacagtaccagcTGAGGGTTGGGCACACCCGATACTTGGATGAAGACATTCTGATTTAAAGGCACAAGCTATATCCACACCCCTCTAATGAGTGAATTCTACAGGGGCTTACCATAAGATCATTATGTCGCCATACTCAATGCCAATCATTGGCTAAAGGAATATAAACTCCTCAAAATTGAGCTATGGGGGTCTCTGAAGTGATGTTGAAATGAAGTTGGCAGAAAAAACATCAGCCCTCACTGATGCgcttgatttattaatttttgtttCCAGTACAATCAAATCCCCCCTTACAAAAGTCACGTCAAGTTTAAAGGCTTCACAGAACAGTAGGTTGAAAATTCAGACATCCGAGTTCAAATGGAACACAGCATAAGCCTAGTCCTAGactattaatttattcatttccaGCGGGgaatatttattcagtatagTTGGTAGTCCAAGATTAAAGATGATCCCaatgtaaataaacagcacTGAATGTCTGAAAACTAGCAAACATAAAGGAAATTCATTCtctatacaggtgcatctaaaccCCCAGCTGGTACTATACATCTGCAACTGGTCAAGACAtcattatactgtttatatatttataaaacatattaaaacctTTCAACATTTCATATTGGTCCACCCTCCCAAACCAAAGGCACTGAGACAGTAGGATTGTGAGATGCAAGGCAGAACTGATTCGTCCGGTAGGTCACATTATTTCAAAGTATGGCACAATTGGAAAGAAATATACAGCACAGAGCACTAAAATCATGAGTCACTCTATAGTAGGCATCAATTTGATATTAGGAACTCTGGATCAGAGCTAgatttctattaaaataaacaaggtTTTCTGtggtaaaaacacaaatttcaacCCCCATACGTTTAATCTCAAATgtcaaatttgtaaaaaaatgtcTAGCCATAATTTAATCATGTATGCACATGTCTTTTGATCCTCAAAATTATGAAGCTCTTTCATAGGTCAAAAATGATAATGCCTCATGGATGATAAATGCTAAGCCAACACACCTTTGTACTGAACTGATAGTGCACCATAGTCTTAAtgaaattttataaaaaaacactagtgACTGTAATCTGTAATCTACTGCTCTCAGACACACTAAAATTACCTAATTAGACAAAGTGTGTTGGATTGCGTTTTAGTGAAGTTAGTCTTATCGCTTCAGTTCACAGcagtgttagcttagcatgcaTCATAGCAAATTACTCATAATACAGAATATGACCTCATAATACAGAAGATTcaatgataaatatatatacattacacaTTTGTTTTTAGAGATTGAGTTCCTCCAAAGCTCCCAATATTAGCATGATGCCAACAACAGAATGAGCTAGCTCTGACTTTAGCTTTCTGTTGACAGCGTTCATATACAGGCAAGATGTACAGTCACACAGACTCGTCATCAAAGGCTCATCTCCCAAAAGTCTTTCATTAACACTCTCAATAAGTTTACAGTTCTCAGGTTCAAGCAGAGAAACATTCTGTAGCTCAGCCGATGCATTAGTGCTAATGATCGCGATGTAAAGCGTGatttcaaaagaaagaaaaagaaaataaagaaaaaagatgatTTAAGAGACTGTCTTTacatcaaagaaaaaaagataatcaTGTAGTTATCATGCCAACAGTGGCAGCATAGCGCTTCACAGTTCCAGAGGAGGAGGGAAAAAGGAGAATGTAGTAGACTTATTGCATAGAATTAAAAAGACAGTACATGAATTTTAAGAATTAGCTTggagaacaaaaaacaaataataataataataataataataataataataataataataatacagggcCTGGGAACTCAGATCAGTAAATGTTCTCTAATACTGCATTAAAATCAGTGAGGAGGTGTGAGGTGTGTATGGCTCAGGAAATGTGATCGCATGTATGCGTGTGTGAGACATAAATAAGATGTTTCCAAGCTGGGGTGGGTTATGCAATTAATCACCATGATATCATTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284406 lncRNA downstream 622 33831220 ~ 33834676 (-) True G209576
TU284399 lncRNA downstream 36093 33797302 ~ 33799205 (-) True G209571
TU284409 lncRNA downstream 53291 33781743 ~ 33782007 (-) True G209579
TU284357 lncRNA downstream 85782 33749177 ~ 33749516 (-) True G209546
TU284249 lncRNA downstream 881781 32953027 ~ 32953517 (-) True G209452
TU284449 lncRNA upstream 232288 34071114 ~ 34073594 (-) True LOC111195844
XR_002651859.1 lncRNA upstream 232294 34071120 ~ 34073539 (-) False LOC111195844
TU284450 lncRNA upstream 233159 34071985 ~ 34073594 (-) False LOC111195844
TU284480 lncRNA upstream 285536 34124362 ~ 34127776 (-) True G209623
TU284484 lncRNA upstream 297386 34136212 ~ 34151668 (-) True G209625
XM_022684011.1 mRNA downstream 22976 33800102 ~ 33812322 (-) False grhpr
XM_022684009.1 mRNA downstream 24799 33800102 ~ 33810499 (-) True grhpr
XM_007245533.3 mRNA downstream 1195369 32629294 ~ 32639929 (-) True gar1
XM_022684003.1 mRNA downstream 1208722 32614920 ~ 32626576 (-) False LOC111195776
XM_022684004.1 mRNA downstream 1209199 32614920 ~ 32626099 (-) True LOC111195776
XM_022684363.1 mRNA upstream 2161 33840987 ~ 33844951 (-) True mrpl18
XM_022684346.1 mRNA upstream 14243 33853069 ~ 33854406 (-) True LOC111195843
XM_007245527.3 mRNA upstream 70283 33909109 ~ 34001611 (-) True pdgfc
XM_007245520.3 mRNA upstream 372739 34211565 ~ 34220540 (-) True fam198b
XM_007245519.3 mRNA upstream 383053 34221879 ~ 34229881 (-) True tmem144
TU284339 other downstream 230309 33602099 ~ 33604989 (-) True G209529
TU284258 other downstream 879213 32955615 ~ 32956085 (-) True G209458
TU284055 other downstream 2317406 31517433 ~ 31517892 (-) True G209303
TU283995 other downstream 2560896 31273868 ~ 31274402 (-) True G209256
TU283958 other downstream 2735437 31098844 ~ 31099861 (-) True G209224
TU284514 other upstream 331941 34170767 ~ 34212849 (-) True G209640
TU284515 other upstream 331941 34170767 ~ 34212849 (-) False G209640
TU284540 other upstream 396092 34234918 ~ 34274593 (-) True G209660
TU284739 other upstream 790761 34629587 ~ 34637299 (-) False egf
TU284743 other upstream 790761 34629587 ~ 34632318 (-) False egf

Expression Profile