RNA id: TU284484


Basic Information

Item Value
RNA id TU284484
length 2705
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G209625
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34136212 ~ 34151668 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attttaacaTAATAACTGCTACCCTGATCCTTGATGAttaaaaagcaacaaaacataaataaataaataaacaaaacaaagtgaAACAAGGAAGTAGTAATGAAAACATAGCAAGTAGCGCAATAACGTAGAAACGTAGAAACGTAATATCCGCAGCAACACTAGTCAAACAGATTCCAAATGTTAAGCATTGCTAGATATTATTTCATCATCTTCTTATTAACACCGAAATGAGCTGAATGAGTTTAAGTTATACACAGAAAGTCGGTAAGAATAAATTACGTGGTGATTAAAAAGTAGGAAACATAATAAGAACGAAGTAGTTTGAAAAGTACAGAGCGATTAAAGATGTAcaagtatatactgtatattatatatttatatatattatattatatgtatatgcaaCCGGTATGTAAGCAGATTTCTTTAAAAGCCGTTTTTCGTgtgaaaatacataaaaaatatttttgtagcgttttttttgtgttggttTTATTAACAAAAGAACATTGCACATCCTGATGATGATGCGGACGATGGTGGCGTGTGCTTGAGCCAACGTGAAGGTTTGAAGTGTGGCAGTAGCTACAAACACTCGGACACACGAATAATCGGACGATGACGAGATTTTCCCGCACGAACTCTCAGCAGCCGAAGCTTTCCGCACGTCCGCCACCGAAGGAATGATGTCATCAGCCCCTGTAGTGTTGGAGATAGATGGTGTTGGGAGAGCGCTGTGAGTCTATTCAGAGGAGGGACAATGTCTCTTTTTATTGAGAGTGGAATACTGACTCCCATTCACACGAGTAAAAGAGTGAGatagaaaaagatagagagataaagaagaaagaaataagaaaaatatatagagagagaaaaaaagagggcaAGAAAgaataaggggaaaaaaaaagagatttttgtTCTATAGAAATCCATTATTTAAGGCACTCGACAGGGTCGTATCCCTCAGGACAGGTCGGTTAGGCTGACGCTCATGCCCACGCCAGGCCGGACGTAGGGTACGGTGGGCACGCCTTTAGGAAACTCAGGGCTCATCACGCGGCCGTTCTCTCCAGTACTTCCAGTGATTGACAACCTCGCTTTGTTCCTCATCGCATCCGAAAAGGTCACCTattgcatacacacacatacacacacacaacacacacacacgcacacacacacaaacacagataactGGTGAGATCAAAAATCCCTGGACATGCTCCTACAGTCTACACTGGATGTCAGTGGATAGGGGACACCTGGCCTTTAACTGGAATTGGACTCTTTTTGCTGTAAAAGCAAATGAATACGAATTATTAGGAGcttttttgacatttatttgTAACATACAGCTTTGGTGAACTTGTCAAAAGTTCATTATAAAATCCCTTGTCCTCTGAATGTGTTTGAgtgcatcagttgtgttgtgaagaggtaaagtTGGTATACAGGGAATATCTCTATTTAGGTAatactggctctcatcaggaacgcaccaaataattaaagttttctctgttcatcagagttaccagcctcagaactgcaagttaacagcaccccagatacatttaggagtattttagtttgttaaacacttttaaatttactacatgattctttatgtgtttcttcatagtctggatgatatcaatattatttacaatgtaagaaaataaatgaatatataaaaacttTGAATCAGTAGGTGTATTCAAACATTTGACTATAAAGGATATGAAAAGCACACCTGGACCATAATTCCCGGAGGTATGTAGGACACTATTAAATGCCACATGTAGTCCAGGTTTTGTCCACATTAATGTTGCTATCAGTGGTGTCACTTACTCTAGCCAATCACCAACAATTTCCCAGTTACCAAAAGCACGACATTCAACATAATAACAAAACCTGGACCAATGACGAGTCCTGTTTACtgttcacaagccattaaaTACCCACACAAATTCAGAAATGGACCGCCTCattcatctgcacccactacCACAAGAGAACACCTTTAATCATATACCGGTGAGGCtgttcccaagctgtcccctggggaaacacttcatgatcaactAACATACCTCCCTTGATAGTCTTTCCAGTAAAACTGCTTTAATTAATCCAGAGAAATACAACTTAACAGTAGCGTAAATAATCCAGGTGTCCCCAAAAGCCTAATGTCCAGTGTAGTGTTAAGACAACAACATGAACCAAATGTGAGAAAGAACATCCAAACTGGAAACACAAACAGGTACCGAATGATCACTGGCGGGATTATAAGCAAAGCATGGTGAAGAACTCATATCGCAGGCATGGACGGTCATGTAGATGAGCAGCAGGACACTCATACATGACCGATGGAGTCAGAACAGAACAGGCTCAGATGGAGGATGGAAAGAAATCATTTTTCTTTCAGTATAGTGTGCAGAGGACAGGAGGGGGAGAAGGGAAGGGAAAAGGGACCAAtaaaaggaggagaagaggaaagGGGAGGAATTCTGAATAGGAATTAAAGCCAATACAACATTACATACGATCCACCTTCGTCCAAAATATCTCCTCATTCAATAGAACATTAAGGGGTTTATGGGGGAGAAGATGGAAgccaaagaagaagaagaagaagaagaagaaaaggaaagagcagaaagagaaaaaggaactttgagaaaagaagaagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284480 lncRNA downstream 8436 34124362 ~ 34127776 (-) True G209623
TU284449 lncRNA downstream 62618 34071114 ~ 34073594 (-) True LOC111195844
TU284450 lncRNA downstream 62618 34071985 ~ 34073594 (-) False LOC111195844
XR_002651859.1 lncRNA downstream 62673 34071120 ~ 34073539 (-) False LOC111195844
TU284405 lncRNA downstream 297386 33835298 ~ 33838826 (-) True G209575
TU284490 lncRNA upstream 16506 34168174 ~ 34168411 (-) True G209628
XR_002651808.1 lncRNA upstream 19088 34170756 ~ 34188629 (-) False LOC111195783
XR_002651807.1 lncRNA upstream 19088 34170756 ~ 34188629 (-) True LOC111195783
TU284509 lncRNA upstream 19099 34170767 ~ 34212849 (-) False G209640
TU284512 lncRNA upstream 36179 34187847 ~ 34212849 (-) False G209640
XM_007245527.3 mRNA downstream 134601 33909109 ~ 34001611 (-) True pdgfc
XM_022684346.1 mRNA downstream 281806 33853069 ~ 33854406 (-) True LOC111195843
XM_022684363.1 mRNA downstream 291261 33840987 ~ 33844951 (-) True mrpl18
XM_022684011.1 mRNA downstream 323890 33800102 ~ 33812322 (-) False grhpr
XM_007245520.3 mRNA upstream 59897 34211565 ~ 34220540 (-) True fam198b
XM_007245519.3 mRNA upstream 70211 34221879 ~ 34229881 (-) True tmem144
XM_022684364.1 mRNA upstream 468793 34620461 ~ 34656484 (-) True egf
XM_007245512.3 mRNA upstream 507822 34659490 ~ 34674207 (-) True LOC103036564
XM_007245511.3 mRNA upstream 524458 34676126 ~ 34708056 (-) True gpm6a
TU284339 other downstream 531223 33602099 ~ 33604989 (-) True G209529
TU284258 other downstream 1180127 32955615 ~ 32956085 (-) True G209458
TU284055 other downstream 2618320 31517433 ~ 31517892 (-) True G209303
TU283995 other downstream 2861810 31273868 ~ 31274402 (-) True G209256
TU283958 other downstream 3036351 31098844 ~ 31099861 (-) True G209224
TU284514 other upstream 19099 34170767 ~ 34212849 (-) True G209640
TU284515 other upstream 19099 34170767 ~ 34212849 (-) False G209640
TU284540 other upstream 83250 34234918 ~ 34274593 (-) True G209660
TU284739 other upstream 477919 34629587 ~ 34637299 (-) False egf
TU284743 other upstream 477919 34629587 ~ 34632318 (-) False egf

Expression Profile