RNA id: TU284721


Basic Information

Item Value
RNA id TU284721
length 3048
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G209798
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34563439 ~ 34566518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtcCGTACCAAACGATTTGTCCACAGATTTAAACCCCATGTGATGGAGCAGATTTGCCCAGGCTGTCTATATCCTACAGCTACATCCACACAGACACGGAACCACACACTGACTATATACATCCCCCTTATTTATCTTCTTctgctcttcttttctttttttattattttttttcctttttttgcaaGCAAGACTGttagatttaattttatttttttttaccacatgctgtgttaaagtgtgtttaaagagCTACAGCATTCACTCCCGTCGGAGGTGATGATGATCTTTAGACATATATACAGGCACGCAGCCCAAAAGAAGCTCAtgtgagggggcggggctacaatGGATTTACACCCTCCCCCCGTCCTCCTCGACCTGCACCAGCATTCTTATCAGAGAATTTATATCATAATAAAGTCCAGAGTCCAGAGCGGGACGAGACTTCGTCTCCATTTGCGTTAAATTCCGTCCACTTTGGGCCACTTCGGGCCACTGTATACCATCAGCAATGGGTTATACACGCCCTTTATAGAGTCCTCCTCAGGGCTAATTGGGTTTGGGGTAATAGGGCAAAATTAGGGTGGGTGGGCTGACATATCCATTTTTGTTCATGGTGCACCATCAACCTTTAGCAGTGTGGTACTTCGGTCCTTCTAGTGCCGCTAGAAGTTTTAGCATCCTTGGGTATACTGAGAATAGTTGGGTAGTAATAGGGTAGATACATCAGGGGTTAGGAGTGGAAAGGGGGTTAAATGGGGAGAAGTCCCAGCTTGCTCAGTCCACTTTGGGTCATAGTGCAACAACAGTGGGCATATTCTAGTTCCCTCTAAAAGAGTGGGTGATATAATTAGGACAATGAATTGTGGTTAAAATGGTGTGGTTGGagggtggttgctgaggtatttCCAAACCATTCACATTCAGCTTGGGGTCACACATATTAAAATTGAAGGTATTATAGTGTTCAAATGGTCATTAAGGGTATTTAAAAGTATTCCTGTGGCCTctacataaatatatagataataaGAGTGAATCCTGgggCCAGAGATGCGCAGAAAGTTTAGCTTTTCATTCAGTTTTGGGCCACACAGATATAGAAAGTGAGTCTAGCAGGTCAAATATATAGAAGGGCTAATTAGGATGAATCCTTAGGGGCAAATAGGGGGGATACAATACGTATGTGTTTTGGGCATTCCTTTTATATCAGTTTGGGTTAACCCTTTGAAGCAGTAAAGATTGGAGGAAATATTGGAGGGAGTCAAAGTGGTTAAATGCTGTCAGTTTGGTCTGAACAGGTATCAAATAGATTTCTACCCTGTATGCAGATAATAGAGGTAATAAAAGTAGATCCTGGGGCAAACTAGTAGAGCAATTTTGGGGTAGAATGTGTTACCATAATACAATAATAGGTTATCCAAGTCCTACACAATTTCTTCCCATTGCTTTCAGTTTTGGTATTCATAAGTATTATAATATCATCTATATAAATAATAGAGGTAATAAGTGAATCCTGGGGCAAAATATGGTGGCAATTGCAGGGTAGATTGGAGGGGATTGGGTGGGTAATGTAGGGTAGGTGTAAAAGAAAAGAGCATTGgggttaaggggttaaacttATCAGAGGCAACTGTGGGAGTAAATGACAATAAGAGCTATGCTTCTATTTTGGTCTTTGTTATAGTGCCATTTTAAAGAAGGGTGTAGATGGATAGCAGGTAGATCCTTGGTGGGGTAAGTTGGGGTAAAAGGATAATAGGAAGGCAGTTAACCAACTGTTGCATAAGCACTTTACTACCATTTGTAATAAACTGAGACCACTTTGGACCCAAAGACATCAGAGGTCATGTTCTTGTTTTAGTACCCAATTAATTGAAGGATTGGTAATGAGTTTTGGGTTTGGGGTGGTAAACTGGGTGGggtaaatatataattgtaGGAGACAATTAGAGGGGTGTGTCTTAATCCTACAATGAGAGtttacaagtgattttattctaGTGCCCTTTTAAAGAGGGCCTAGAGTAAAGTGAAAGAGTGGGAAATTGAAGATGGGTCTAAATTGAAGGGCTGGTTATCCAACTTTGGATGAACATTGTGCTTGTTCTAGGTGGGCTTTAAATGGGCTATGATTGGGAAGACTCTTGGGGGTCACAGAGGTAAACTGATGGGACAAATGATGGAATATGTTTACGAGATGGGTCCTAGAACTGCTTTGATTAATTGTGTAAAATTCACATTGGGAATTCTTGGGAAAGGATGGAGGATACTCGGGGAGAGTCTTGGTGATTTGGGGGTAAACATAAGGTAGAAATGAAGGTGAGAGGTGGTGGGAACCCCAGCCCTACACTGAGTGCTTTCCTTCCCTTTGCGTCCATTTTGGGTCACGGTGCACCATCAGGGGTGTGTATTTGTTCTAGCACCCCCTTTAGACAACAGGTGAAAGTCCCAGGGCTGGGGGGCGAGGGGATAAACAGGGGGTTGAATTTGGGATTCTTCCCAGTGTCCAATCCCTAAACGGGTCTATCCACTGCATACTGACACGCGCTGAGGTTGGACGGGGTCTGCACCCCCGCGTAGCTGAAGCTGGAGTGCTGCTTGGCTTTCAGTCTGAGACTGGCCAGGCTAGAGTTGCATGTGTCCCGGTAGACGTAGGGTGGCGTCGGGGGTGCATAGGGGCAAGCAGGGGCAGAATTGAGAGAGGGTCCACCCAGGTTGTTGAGGGGGTTACCGAGCGGCGTGTTGAGGCCAGAGGTGGGCACCATGCCCGAGGAGACGCTCATAGAAGAGATGGAGGTGGGTGGAGAGAAGACAGCCTGAGAGCTGAGTGGACTCACGTTGACCGAGTTGAAGAATGGGAAGCTTTTGGCAGACAGCGATGCTGGTGCCAGGCTTTTGGCCGCCCAGTTGTTGTAGGGCGGGTAACTGGCATACATGTCCTCATAGGGCTGCACCAACCCGTTAAACTGGGCACCAAAGCCGCCCTTACACAGCTCCGCCTGCTGGTTGCGCTCACGCTTGCGCCACTTGGCTCGCCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284562 lncRNA downstream 176804 34386145 ~ 34386635 (-) True G209682
TU284509 lncRNA downstream 350590 34170767 ~ 34212849 (-) False G209640
TU284512 lncRNA downstream 350590 34187847 ~ 34212849 (-) False G209640
XR_002651808.1 lncRNA downstream 374810 34170756 ~ 34188629 (-) False LOC111195783
XR_002651807.1 lncRNA downstream 374810 34170756 ~ 34188629 (-) True LOC111195783
TU284716 lncRNA upstream 43518 34610036 ~ 34613396 (-) True G209793
TU284744 lncRNA upstream 63069 34629587 ~ 34630334 (-) False egf
TU284746 lncRNA upstream 66267 34632785 ~ 34633216 (-) True G209814
TU284808 lncRNA upstream 558645 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA upstream 569700 35136218 ~ 35142312 (-) False LOC111195784
XM_007245519.3 mRNA downstream 333558 34221879 ~ 34229881 (-) True tmem144
XM_007245520.3 mRNA downstream 342899 34211565 ~ 34220540 (-) True fam198b
XM_007245527.3 mRNA downstream 561828 33909109 ~ 34001611 (-) True pdgfc
XM_022684346.1 mRNA downstream 709033 33853069 ~ 33854406 (-) True LOC111195843
XM_022684363.1 mRNA downstream 718488 33840987 ~ 33844951 (-) True mrpl18
XM_022684364.1 mRNA upstream 53943 34620461 ~ 34656484 (-) True egf
XM_007245512.3 mRNA upstream 92972 34659490 ~ 34674207 (-) True LOC103036564
XM_007245511.3 mRNA upstream 109608 34676126 ~ 34708056 (-) True gpm6a
XM_022684015.1 mRNA upstream 160644 34727162 ~ 34731836 (-) True spata4
XM_022684016.1 mRNA upstream 175173 34741691 ~ 34759091 (-) True LOC103045435
TU284540 other downstream 288846 34234918 ~ 34274593 (-) True G209660
TU284514 other downstream 350590 34170767 ~ 34212849 (-) True G209640
TU284515 other downstream 350590 34170767 ~ 34212849 (-) False G209640
TU284339 other downstream 958450 33602099 ~ 33604989 (-) True G209529
TU284258 other downstream 1607354 32955615 ~ 32956085 (-) True G209458
TU284739 other upstream 63069 34629587 ~ 34637299 (-) False egf
TU284743 other upstream 63069 34629587 ~ 34632318 (-) False egf
TU284750 other upstream 143253 34709771 ~ 34750206 (-) False LOC103045435
TU285068 other upstream 2143902 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4961115 39527633 ~ 39540816 (-) True LOC103035726

Expression Profile