RNA id: XM_022684364.1


Basic Information

Item Value
RNA id XM_022684364.1
length 4984
RNA type mRNA
GC content 0.47
exon number 20
gene id egf
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34620461 ~ 34656484 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCTGAGACTTTAACAGTGGGAGGGAAAAACAGAGCGAGCTCAGATTCACCACGGGACGGTCAGGAATTTCATACTTTGCTTCCAAAACAGCCGGACTGGACtgcagtgtgtataagtgtgtgtgtgtgtggatgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgttgcaggctATAGACAAATTCTAGACTCTCTCTAAAACTTCAGTGGGCTTCAGTTCTGCCTGGCCCGGTGTGGAGAATCATCTCAGCCCTGCTCTGGCTCAGTTATGTAAATGCCCCGGTGGGTATTGTGCCCTCTGTTGTCCGCCATCACCCTGCTGACCTATGTTGAGGCCCACGTGGAGGATGCACGGAGGTCACGGGCGGTTGCCGTGGCGCTGTGGCCGAGGGAAGGACTGAACGTGGGAGTCCGTTGGTGCTGAGGTTGATTGAATCAGGTTGAATCGGGTATGTTCTGGGGGACGTTAGCGGCCGTGGCGGTGGCGCTGCACCTGTGGCTGTTGATGGGCAGGACCTGCTGCAGTCCAGCGGAAGCACCAGCATGCTGGGGTGGACGAGCATGGTCTTTAGGAAACTTGAGCTGTGTGGATCCAGAGCCTTACCTGCTGGTTGGCCACAGGAACACTATTCTGCGTATAGATCTGGACAGGGGTGATCAGGAACTAGTTGTGTCTGGAGTGGGAAAATCCATCCTGCTGGACTTTCACTACAGAGCTGGGAGACTGTACTGGGTAAACATACACACTGGGGTCCTGAGCCGGGCAGACTTGGACGGGTCTCACAGAAAGAAGCTCCTATCACTGGGGAAAGGAGTCTCAGGATTAGCTGTTGACTGGATAGAAAACTCAATATACTGGAGCAGCAGGaaaagaggaatgatccagcgGGCCGACAGCGATGGGAAAAACAAGAGCACTGTTCTTCAAGATCTCTCTCAGCCCAGCAGCCTGGTTATCGACCCAAACCAGAGATATCTGTTCTGGATGTCTGCTGGAGAAACCCCCAGCATCCAGCGCTCTGACCCGGTGGGGGGACAGAGGACCACAGTGCTGAAGGTGCCGGACAGGCTGCTGGCTCTGGCCTTAGACCCTGTGGACCGGAGGCTGTTCTGGGTCCAGCAAGGTTCGGGTAAAGCCAGTGCCTTGGGGTCATGTGATTACAACGGCAACCTGATCAATGTTATCAATCAACCTGGAAGGTGGAAGTCTCTGAAGATGTCTCTGTTCCTGGATCACCTGTACCTGACAGACTCCGCCTCTAATAGCATTGCAcgaattaataaatatatgggAGGCCGTCCAGAAAAGATCAACACCACAAAGCTGCTGGGTTCTCCTACAGCTGTCCGAGTGATCCATCCCATCAACCAGCCTGTAGCAGAAGTCAGTGCCCCCCTAACATCTGGTTGCAACCCTCAGACTgaacagtgtgtgagtgtatgttccAACCCGGACGGATCCGATCAGTGTAACTGCAGAATCGGATTCACCCTCAGCAAAAAGGGCGGCTACTGCGAAGATATAAATGAATGCGCTCTGTGGAACCATGGCTGCTCTTTAGGCTGTGAGAACATTCCTGGTTCTTATTTCTGCACCTGCCCTGAGGGCTACCTGCTGCTGCCTGACACAAAAACATGCAGAGagattgAGCCCTGTGTGGAGAATGGTACACTCTGTGATCAtgcctgcacacacactcaggagGGAGACGTCTGTGTGTGTCCAGTTGGATCCACCCTAAAACCCGATGGGCGTTCCtgcacagGCTGTCTGTCTGCGGATGGCGGTGGCTGTAGTCAGGTGTGTGTGACGCTGTCACCTGGCAGGTGGGAGTGTGAGTGCCAACCTGGATACCAACTGCAGCCAGATGGCAAACAGTGCAAAGCCACAGGTCCTCCAGCATTCTTGCTGTTTGCTAACGGGGTGGACATCAGGAGGGTCAGCATGGACGGGTCAGGGAGCTGGACTCTGCTGCAGGATCCTGAAGGTTCCCTCCGAGCTCTGGACTATGATCCAGTACAGAACATGgtttattttgTCAGTGGTGGACAGAAACAGATTGAGAGGATTTCTGTTGATGGAGGATCCAGAGAGCTGCTGCTGTCCACCGGACCAGACTCTTTACCTGAGGGACTGGCTGTGGACTGGGTCAACCGGAAACTCTACTGGACTGATGGAGGTTCGTCCTCGATTTGCTGTAGCAATATGAACGGGCAGGACACAGAAGTTCTGATTTCTGAGAAGCTCCTGAAGCCTCAAGCGATCTTGGTCCATCCACAAGCTCAGAAGTTGTTCTGGACAGATGTGGGCAGTCGGCCAGCGGTGGAGAGGTCCGGTTTGGGCGGTCTGGGCCGTGAGGTTCTGGTCAGTGCTGGACTGGTCACTCCCAGTGGACTGGCCCTGGATCTAAGCTCTCAGCGGCTCTACTGGACTGACCTGACGACCGGACAGATAGAGTCCGCTAGACTGGACGGATCTGAtcgacacacactcacacagaaccAAGTAGGGCGTCCGTTTGCAGTGGCAGTGTTTGAGGACAGTCTGTGGGTCAGTAATTGGGGTGATAAACAGATCTACCGGCTGGACAAGAAGACTGGACTCAATCCACAGCGCCTCCTAATGGAGACTGTACAACCAGCCGCAATCACCATCATTCACCCCCTAACTAAGCCCGGGTCAGGTGACAGGGAATGGAGTGATCATTTAAAGAACAAAACTCCAAATGATGAAAGTCTGCCTTCGGACTCAGGAGACACTGTGGCCTTCACAGAGAAAATGGTGTCAGCAGAATCTAAAGTCACGTCTAGGCCGACCACAAGCAGTCCGATGGACGTCACACCTCCATGGCGTGGTGGTATGGAGAGCTGCCCATCCACACATGACTCCTTCTGTCTGTATAATGGAGTGTGTCTCTACTTCCCTGAGATGGAGTCTTACGGCTGCAActgtTTGCCAGGCTACATTGGGGAGCGCTGCCAGTTCAGTGATTTGGAGtggtgggagctgcagcaggccgagcaggagaagaggaggaacaCAGCCATCGCTGTCTGTGTGGCACTACTTATCCTCCTGCTGTCCATCGCCGCTAGTATCACCTACTGCTACAGGTGCAGGAGGTTAATAGGAGTGCGCCCCCCAGTGGACAGTATGAGTGAAGCGAGTATCAGTGAAGATAGCATGGCAGAAGCGTCGTCCAACACTCCACAGttcttTGTAGTGCTGGAACATGGAGGCTGTAATGATGGAAAAGTGCTTCATGTGGTGAGCTGTCAGAGGAGAACTGTGTGTCCATCCTGCTCCTCAGAAACAGgtgagaGTTTTGTTTCAGAGGAGGCGGGAACTCTGAAGCGAGGTGATAAAGCATTGGATTTGGAGAAATGCTCACGTTCACCCAATCtcaccagacctgaacctcTTTCAGAACCCTGTGATAATCTCATCTCTCTGGATGACCCCGACCACAGACCCCCTCAGCTGCTCTGAACCCACCTGCTGGTTCTGTCCTTAACACAGGGTACacttccagtcaaaagtttgagaaCACACTgctttaacttgttttttttttatatctttttttattcagtttactGTTTTGTAGTGTTGTGATGTCAGCACTCAGAGCTTTTTAGATGTTTAAACCATCATTGTGCCAAAAAAGATTCAGTCAGTAgttttacttttagtactttTAGAGAAAAGAAATCTCATGAAACGGTGTGGGTGTTGGAGATGATTTCAACCAATGGCTGTATGTAAACGTGACGCCATGCTTCCATTCCTTTCAGTTCTATAAATATTAAGACAAAAATATCCACCATGTTGTTAAATTTCAAATGTCCaatgtctcagactgccttcattaaAATTGTCCAAATTAAACTACATTACCAGAGATCAGCTGTGTTCACTGCTGAGACAAACCTGACTACAGTCCAGTTTTAGCCCTGAGCTGTTGTCAGAGACCATtaaaagaacataaataatgttttaaacattgtttgtgtttgtcagTTCAAACCAGAACATATAGTACATAAATGTGACCACCAAGTGCAGACTGAGACTTAGTGCTAATACAAGTCTTATGACAACTAATTAAAGTTCACATTGACATTTTACACAACAGCagacttacaaaaaaaaaaccctgcaaagagtgttaatagtgttaataacaataacaccacatcataaaaaaagaagaattaaatAAGTTACCTGACAGCTCAACTACAAAGTGTGTAGCTTACTCCAACTAAAGCAGTTGGATTTGTTGGACACTGAGATGGAAAGACAAGTCATTAAAACAAATGGAGATGGGTAGAGGGctttacttttgagagacgTTATATGCTTATATACTTTAAGGTATATAAGGTACTTTACGCTAACTTATTTCAATATAGTTTTcagttttcataaaaaaaacaaaaacagctttCCAAAGTGTAGCAGATTTGTTTTTATAACGTAAATGATTGTTCTTTAACAGTTACCGTTGGATGAGCTGTACAGAATGCTGGACAAAAaaattcttataaaaaaaaatattattggttTGCTAGGTTGTCCAAAGCTTGTTGGAATTACCAACAGTAACAAAGTAAGAAGACATTTGTGATGGGTGCTTAATTGATAGATTACGCTCTCTTGTGCTTGGTTCGCTGATTTCTCTGCTTACAAACATTGTAAATAGTATTTTTGGCTGGAATTGCATAGAGTGTCTTGTAGGATTATACATATAGGatgttatatactgtactgaatATAAGTGTATAGTGTTTGAAGGTGTCATTACATCAGTaccaaaagtaaataaatataaatgaataaagacagaaatagaaataatCATAAAAGCTTTTAAATCTTAGTTTAACACAGAGATTATCTTTATTATCTGTGGACTTTAGGAATAAAGACAGTGCTGTAAATGAAAAAAGATTAATAAAGGCTTTCATCATTGCCAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04357 EGF; epidermal growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284716 lncRNA downstream 7065 34610036 ~ 34613396 (-) True G209793
TU284721 lncRNA downstream 53943 34563439 ~ 34566518 (-) True G209798
TU284562 lncRNA downstream 233826 34386145 ~ 34386635 (-) True G209682
TU284509 lncRNA downstream 407612 34170767 ~ 34212849 (-) False G209640
TU284512 lncRNA downstream 407612 34187847 ~ 34212849 (-) False G209640
TU284808 lncRNA upstream 468679 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA upstream 479734 35136218 ~ 35142312 (-) False LOC111195784
TU284805 lncRNA upstream 479770 35136254 ~ 35138086 (-) False LOC111195784
TU284811 lncRNA upstream 482966 35139450 ~ 35140107 (-) True G209872
TU284846 lncRNA upstream 651835 35308319 ~ 35308594 (-) True G209894
XM_007245519.3 mRNA downstream 390580 34221879 ~ 34229881 (-) True tmem144
XM_007245520.3 mRNA downstream 399921 34211565 ~ 34220540 (-) True fam198b
XM_007245527.3 mRNA downstream 618850 33909109 ~ 34001611 (-) True pdgfc
XM_022684346.1 mRNA downstream 766055 33853069 ~ 33854406 (-) True LOC111195843
XM_022684363.1 mRNA downstream 775510 33840987 ~ 33844951 (-) True mrpl18
XM_007245512.3 mRNA upstream 3006 34659490 ~ 34674207 (-) True LOC103036564
XM_007245511.3 mRNA upstream 19642 34676126 ~ 34708056 (-) True gpm6a
XM_022684015.1 mRNA upstream 70678 34727162 ~ 34731836 (-) True spata4
XM_022684016.1 mRNA upstream 85207 34741691 ~ 34759091 (-) True LOC103045435
XM_007245508.3 mRNA upstream 117578 34774062 ~ 34785667 (-) True aga
TU284540 other downstream 345868 34234918 ~ 34274593 (-) True G209660
TU284514 other downstream 407612 34170767 ~ 34212849 (-) True G209640
TU284515 other downstream 407612 34170767 ~ 34212849 (-) False G209640
TU284339 other downstream 1015472 33602099 ~ 33604989 (-) True G209529
TU284258 other downstream 1664376 32955615 ~ 32956085 (-) True G209458
TU284750 other upstream 53287 34709771 ~ 34750206 (-) False LOC103045435
TU285068 other upstream 2053936 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4871149 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 4957234 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 4989870 39646354 ~ 39795941 (-) False atp8a1

Expression Profile