RNA id: TU284746


Basic Information

Item Value
RNA id TU284746
length 310
lncRNA type intronic
GC content 0.54
exon number 2
gene id G209814
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34632785 ~ 34633216 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaaggcaggtgcctatagatctaatggcatgtgccacgggAGCTCGCTATagcctctactgaaaggcaggtgcctaagAATCTAATGGCATGTGTCACGGGAGCTCGCTATagcctctactgaaaggcaggtgcctatggatctaatggcatgtgccacgaGAGCTCGCTGTagcctctactgaaaggcaggtgcctatggatctaatggcatgtgccacgaGAGCTCGCTGTagcctctactgaaaggcaggtgcctatggatctaatggcatgtgccacaGGAGCTCGCTGTGGCCTCTACTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284744 lncRNA downstream 2451 34629587 ~ 34630334 (-) False egf
TU284716 lncRNA downstream 19389 34610036 ~ 34613396 (-) True G209793
TU284721 lncRNA downstream 66267 34563439 ~ 34566518 (-) True G209798
TU284562 lncRNA downstream 246150 34386145 ~ 34386635 (-) True G209682
TU284509 lncRNA downstream 419936 34170767 ~ 34212849 (-) False G209640
TU284808 lncRNA upstream 491947 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA upstream 503002 35136218 ~ 35142312 (-) False LOC111195784
TU284805 lncRNA upstream 503038 35136254 ~ 35138086 (-) False LOC111195784
TU284811 lncRNA upstream 506234 35139450 ~ 35140107 (-) True G209872
TU284846 lncRNA upstream 675103 35308319 ~ 35308594 (-) True G209894
XM_007245519.3 mRNA downstream 402904 34221879 ~ 34229881 (-) True tmem144
XM_007245520.3 mRNA downstream 412245 34211565 ~ 34220540 (-) True fam198b
XM_007245527.3 mRNA downstream 631174 33909109 ~ 34001611 (-) True pdgfc
XM_022684346.1 mRNA downstream 778379 33853069 ~ 33854406 (-) True LOC111195843
XM_022684363.1 mRNA downstream 787834 33840987 ~ 33844951 (-) True mrpl18
XM_007245512.3 mRNA upstream 26274 34659490 ~ 34674207 (-) True LOC103036564
XM_007245511.3 mRNA upstream 42910 34676126 ~ 34708056 (-) True gpm6a
XM_022684015.1 mRNA upstream 93946 34727162 ~ 34731836 (-) True spata4
XM_022684016.1 mRNA upstream 108475 34741691 ~ 34759091 (-) True LOC103045435
XM_007245508.3 mRNA upstream 140846 34774062 ~ 34785667 (-) True aga
TU284743 other downstream 467 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 358192 34234918 ~ 34274593 (-) True G209660
TU284514 other downstream 419936 34170767 ~ 34212849 (-) True G209640
TU284515 other downstream 419936 34170767 ~ 34212849 (-) False G209640
TU284339 other downstream 1027796 33602099 ~ 33604989 (-) True G209529
TU284750 other upstream 76555 34709771 ~ 34750206 (-) False LOC103045435
TU285068 other upstream 2077204 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4894417 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 4980502 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 5013138 39646354 ~ 39795941 (-) False atp8a1

Expression Profile