RNA id: TU284750


Basic Information

Item Value
RNA id TU284750
length 1894
RNA type TUCP
GC content 0.43
exon number 5
gene id LOC103045435
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34709771 ~ 34759091 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCtcagtggtccagtggtctaaagacACTATCACTATGATAAATAATCATGAATTCCACTCcctgactgtagggggagccaaGAAGGAAAAAACACCAGTTCTCATACAATGTTGCTTTAAGTTTGCTTTAAGAGTGTTCTTGATCCTGACTGTACCGCGTATGTGTTTAGGTAAACGTGTCGACTATCGATGGTGTGACCCCCGTGTTTAACTCCTGCTCGGCTGGCAGTGTGCCATGTTTGGAGCTGCTGTTGGAATGTGGAGCCAGACCACAGGTTCTAGCACCGTGCCAGCCATCCCCCATCCACGAGGCAGCCAGCAGAGGTCACAGTCAGTGTGTGGAGGTGCTGATCTCGTGGGGGGCAGATGTGGATTATGAAACTCGGAATATGGGCACTCCGCTCTACACGTCCTGCAGATGCAGAGAGTTTGTCTGCGCCCGAAAACTTCTAGACGGAGGAGCTAGTGTTCAAAGGGGCCGGTTGATGGAGACCCCCCTGCACGCTGCGGCTCAGCGGGACAGCCTCAGCATCACCAAACTGCTGCTGGAGTTCGGTGCCGATGTTAATGCTAGAAACCTGAGCTTAAAACGGCCGGTGGAGGTAGCGTCCCCCGGAGGCCTAACCGAGGGATTCTTACTGCTGTATGAAGccacACCCCGTTCACTGAACCAACTTTGTCGTCAGCAAATCAGAGAGTGCCTGGGCCGAACTAGACTACACCTCATTCCACACTTGCCCCTCCCCACAGCAGTCATTAAATTCCTACAGTACAGATAGCATTACTAAGTCCAGCTTACTAGGTTTTCCTACCCCCTAAAATGCTTATAGAGTTGCACTCACAACACTGTAAATTTGGTTTGTtagctaaatttaaatttaactaACCAGTATCAAAAAAGGGCTATCTGTATAACTGGAAAAGGGGATTTTTATAGTACTGAAAAAAGTTACCTTTTGTACGGAAAGAAGTTCTCTATAGTGATTAAATTGGTTCTCTGTATTACTAAAAAGCGTTCCCCTTATTATTGAAAAATGCATTCCCTATAGCACTGAGTTTCTCCGtttagaggggagtattatcagcctgtagtcagCCTGTAGTACTTttggagtagtattagcattagctgctaactgtgctaagtgctagctctttcaccattcagaggcgagtacaTTGGACTGTATCCTgcttgtttaccatgttaaaacaagctacccgGGACGAAcctctagctaatatcgccctggcttacgagaacactcagggttcctaaGTGTATTGCTATTGCaaggcattagccgctaactacaGCTAGCGCTAatgattagctgctaatgctaatgatgctgcacccagccttagtataAATCTGGacatttaagcttactgtaaatacatggaaacactttactcacccaaataaacaattttaagaTGAAGAAAATGTTTGatgaagaaaagttttttttttttttttttttaagaattactgttttgtttacttaacttagctcaGGTTTATAGGTCTCCCCacccagtggcaagacctgctgaattagaagaaaaacatggcaacacacCTGTTCAACCTTCACTGCAAAACAGATTTATTAGCACAGTTTAAAACAATTCAGCTGTttgtaataaaccaatcaaatgAGTCCaatttatatatctttatatcaactaatgtaaaaaaaaaaGGttcttctaaaaataaaatagtaaaaataattgaccctgcttttgttggagaactgtctctactgtctagagAACAATGTTCTTCTAGATTATTagacattgctgtgaggatatgattgcattcagtggaAGGAGCTGTAGAAAATCAGGATCAGGTTAGGATGTTGGATAGATGATTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284746 lncRNA downstream 76555 34632785 ~ 34633216 (-) True G209814
TU284744 lncRNA downstream 79437 34629587 ~ 34630334 (-) False egf
TU284716 lncRNA downstream 96375 34610036 ~ 34613396 (-) True G209793
TU284721 lncRNA downstream 143253 34563439 ~ 34566518 (-) True G209798
TU284562 lncRNA downstream 323136 34386145 ~ 34386635 (-) True G209682
TU284808 lncRNA upstream 374957 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA upstream 386012 35136218 ~ 35142312 (-) False LOC111195784
TU284805 lncRNA upstream 386048 35136254 ~ 35138086 (-) False LOC111195784
TU284811 lncRNA upstream 389244 35139450 ~ 35140107 (-) True G209872
TU284846 lncRNA upstream 558113 35308319 ~ 35308594 (-) True G209894
XM_007245511.3 mRNA downstream 1715 34676126 ~ 34708056 (-) True gpm6a
XM_007245512.3 mRNA downstream 35564 34659490 ~ 34674207 (-) True LOC103036564
XM_022684364.1 mRNA downstream 53287 34620461 ~ 34656484 (-) True egf
XM_007245519.3 mRNA downstream 479890 34221879 ~ 34229881 (-) True tmem144
XM_007245520.3 mRNA downstream 489231 34211565 ~ 34220540 (-) True fam198b
XM_007245508.3 mRNA upstream 23856 34774062 ~ 34785667 (-) True aga
XM_022684023.1 mRNA upstream 397425 35147631 ~ 35167225 (-) False ctso
XM_022684022.1 mRNA upstream 397425 35147631 ~ 35167215 (-) False ctso
XM_022684024.1 mRNA upstream 402699 35152905 ~ 35167209 (-) True ctso
XM_007245505.3 mRNA upstream 418334 35168540 ~ 35236306 (-) True rnf130
TU284739 other downstream 72472 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 77453 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 435178 34234918 ~ 34274593 (-) True G209660
TU284514 other downstream 496922 34170767 ~ 34212849 (-) True G209640
TU284515 other downstream 496922 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 1960214 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 4777427 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 4863512 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 4896148 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 5182932 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile