RNA id: TU284877


Basic Information

Item Value
RNA id TU284877
length 808
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G209924
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35647402 ~ 35648209 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcacagtatattctttacatatatagtaaaacattgtttgatcaggcatgtgactaacacagactctattgtgacaaattaacccacacgatacataaggcgtttactaacacatagggtctattgtatggcggtctaaccacgcgccactaacacattaacatataacatatgagatttATTGTGAGACTTgtgtagctcatgcttgaagcatttcgtttACTGCATGCCTctgactaacggccatcaatcatcagctagtgcactctgtatgaactaaattgatacaaaggaggcttcgggacgaacagtgcggcctttctctctgtgcgtgcaaagtccttcacctaccaaagcgggaggatgcgcgcacatagggagggcggcactgtctaattactgaaacaatgtcacactgtctgactggacccagtcaattcttaaaacaataccacactgtccggctggaCACAATCAAGGCCAAACattagtggtccggtcagacctgtgaaacttgagtactaacacgtgaaattatgcatactaacatgagatgattttagcaacgcctcatcagcaggcttcacgtcatttggggtataaacatggagtcagatcagaggggggtcagaacttatgctgggacggctgttagacggtctttcatgtgtgggttctcctgaatattcagtactttgtaataaatacttggtttgctttcaacttcactccacctgtctgactctctctatcaaacgaacacgtaggggagttgtaccccggacgagaggtgggtgttgacccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284846 lncRNA downstream 338808 35308319 ~ 35308594 (-) True G209894
TU284808 lncRNA downstream 501822 35125163 ~ 35145580 (-) True LOC111195784
XR_002651809.1 lncRNA downstream 505090 35136218 ~ 35142312 (-) False LOC111195784
TU284811 lncRNA downstream 507295 35139450 ~ 35140107 (-) True G209872
TU284805 lncRNA downstream 509316 35136254 ~ 35138086 (-) False LOC111195784
TU284882 lncRNA upstream 54580 35702789 ~ 35703454 (-) True G209929
TU284901 lncRNA upstream 187994 35836203 ~ 35836645 (-) True G209946
TU284906 lncRNA upstream 225666 35873875 ~ 35878253 (-) True G209951
TU284970 lncRNA upstream 484921 36133130 ~ 36168032 (-) True G209993
TU284971 lncRNA upstream 486575 36134784 ~ 36168032 (-) False G209993
XM_022684026.1 mRNA downstream 383994 35172219 ~ 35263408 (-) False rnf130
XM_007245506.3 mRNA downstream 411095 35172219 ~ 35236307 (-) False rnf130
XM_007245505.3 mRNA downstream 411096 35168540 ~ 35236306 (-) True rnf130
XM_007245504.3 mRNA downstream 411097 35172219 ~ 35236305 (-) False rnf130
XM_022684023.1 mRNA downstream 480177 35147631 ~ 35167225 (-) False ctso
XM_022684035.1 mRNA upstream 1041390 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA upstream 1041390 36689599 ~ 36691324 (-) True LOC111195785
XM_022684365.1 mRNA upstream 1141820 36790029 ~ 36792803 (-) True LOC107197706
XM_007252895.3 mRNA upstream 1145173 36793382 ~ 36804302 (-) True LOC103044642
XM_007252896.3 mRNA upstream 1161098 36809307 ~ 36810496 (-) True c24h12orf73
TU284750 other downstream 897196 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 1010103 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 1015084 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 1372809 34234918 ~ 34274593 (-) True G209660
TU284515 other downstream 1434553 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 1062211 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 3879424 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 3965509 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 3998145 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 4284929 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile