RNA id: TU284906


Basic Information

Item Value
RNA id TU284906
length 4379
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G209951
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35873875 ~ 35878253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tTGAATTTATTGAAAGGATAGCCCCTTGAGATGTGACATCTCATTTTCAAGGGGGTcctataaatacatacacaaaacaaacaagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatttacacactaAACATACATTgcacatacatatacagctcacTTTCCACCAGAACTCAACTTATCAAATTACATCACTCGATACTTATAATATTCCAATACAGATaactgaaaacaattaagaaacaGAGTTGTTttaagatgaaaaaaatataacattgcatatataacaaatataacatcaatcggtacttttattttaataccaatacaaacaacagaaaaatatatataaataaataaattaaaaacataaacacgTAGTTTTAagataagaaaataaacatttcctgAAGCAGTGAAGTGAAGTTaattttttcaaagaaaaaggAAGATTATTCCAGTCAGAAGGAGCTTTGTAATTAAAAGACCTTCGCCCTACTTCTTTAGAGATTCTaggaacaaagaaaaaaggataTTGCATATGCCGAAGAGAATAAGAAGAtttaaatagaacaaaaaactgttttaagtAGGGTGGACAatccaaataaatacatttaaaaataaactgtacccAGTGATATTGTCTTCTAGATTTAGGTTGCAACCAATTAATTGATTCGAACATAAAACAGTGATGAGTTCTATATGGACATCTCAAAACAAACCTACACAAAGAGTTAAACACAACATTAAGAGGTCTTAAGTGAATTTCAGAGGTGTTCATATAAACTATATCAGCATAATCAATAATAGGTAAAATTAATTGAGAAACCAATCTTTTTCTAATATGAAACGTAAAACAATTAATTGCTCGATAAAGTGAACTCAAACaaccatatgtttttttaataatatagtcAACATGGGGTTTAAAGGAAAATTCAGAGTCAACCCAAAGACCAAGATATTTAAATGAATCAACTTTTTCAAGAGGTGATCCATcatcaaaataaatatgtagaTCCATGCTGAGAACCATGCTGCATACCAAACAACATGCAACAAGACTTCTTCTTATTCAATATAAGTTTATTATCATAGAGCCAATTTTGGACCAAATTAAACTCAGACTGTAATGAATTCTGAATTTGTAACAAATCCGAATTAGAAACATAAATAACAGTATCATCCGCATATAAGTGAACAGAACATTGTGAGCAAATCTGAGGCAAGtcattaataaaaatagaaaaaagcagGGGTCCCAAAATGGAACCTTGAGGAACACCTTTATCAACTATTAAATAGTCAGATTGACTTCCCTGAAAAACCACACACTGACGTCTATTATGAAGATAAGCACTAAACCATAGCAAAGCATTTTGACTTAGACCAATAGAATAAAGCTTATCCAAAAGAAGATAATGATCAACCATATCAGAGGCTTTAGATAGATCGATAAAGATTGCACCTGTATATTGACTTTTATCAAAAGATGAGAACACATCGTTAGAAAATTTTATGAGAGCTGTAATAGTGGAATAATTAGATCTAAAACCAGActgagataaagataaaatattaaacttattaaTATACTCAGATAATTGATTAAAGATGAGTTTCTCAAAAATTTTAGCTATAACACAAATAATAGAAATTGGCCGATAATTATTTAAGTCAGATTGATCTCCGCTTTTAAAAAGAGGAGTAACTCTAGCGCATTTCCAGATTTGAGGAACTGAACATGATAACAGGGACAAGTTAAATAAGTCGGCAAGGGGATACATTATTATGTGAGCAACTATTTTAATGAACTTGGTTTCCAATCCATCAGGACCAGCACAACAACCTACTTTCAGCTCAGATATCGCTTGAAATACATCAGTGGGCAAAATATTAGTAAACGAAAATGAACTATTTAGAGTAtcagattttaaaacatttgccAGACAATAAGATTTTGGATATTGGGGACCACAAATAGAAGAAAAGTACTGATTAAAAGCCTGAGCAATTTGTAAAGGATCAGAAATAGTTTTATCATTAAATCTTATCTCGTTTATGAAGcttttatcagttttatttaaaaccTGATTCAACTGTCTCCAAAACTGCTTAGGATGATTAAAATCCTGAGAAAGGCTCTCTTTATAATAGTTAGATTTGGCATTCCTTGTTTTTGTCTTACACAAATTCCTCAAACATCTATACGTTTCCCAATCAGCACAATCTTTAGACAAGTGATATTTGGCCCAGGCTTTATCCCTTTGTTTAAAAAGACTAATAAGATGTGAACTAATCCATGGTAGATGTCTACCTTTAACTCTGATTGTTTTCAAAGGAGCATGTTTATCAATCACGTTAACAACTTCAGAGTAAAAGAAATCCCATGCTTCATCTACAAAAGGAATTAACTGGAATCGATTCCaattaacattaattatatCTTGAATAAAATTATCAACATTCATATTCTTATTCTGTCTCAATCTAATATACCTAGGAGGAGAGCGTGgagttttaattttccataCACAGAATATGATCGAATGATCACTCAAACAATCTGACATAACACCAGATTTAATTATTCTTTCTGGGTTAGTCACCAGTATCCAGTcaattaaagaagaagactggTTGACCACCCTATGGGTTGATTAATTAACTGCGTCAGATTTACACTACCAAATAAATGTCTATCTTTAGAAGATGAACGGTCCAGCCAGTTTCTATTAAAGTCTCCCAAAATGATCATTTCACTGTGCCTCTCAAGAGAATTAATAGTTGACAAAATACACTTAGTAGAGTCAATTGGAGCATGAGGAGGTCTATAGATATTACCAATAATTAAGTGTTTCTTATCATGaaaattaatatgaataaacaaacattCAAAGTGCGCTGGCTCTACTTTAGGAGCAACACGCACAGAAATCAATCTTGAAGAAACATAAGTAGCAACTCCACCTCCTCTAGATGCCCTATCAGctctatataaaacaaaatgatctatttttatatcattatCAGAAATATTACTATGCAACCATGTTTCAGAAATAGTGACAATATCTGGTTTATAGAAGTTTATCCAGGCTCTAAGAAGATCAATTTTTGAAACAAGGCTcctaatatttaaatgaataaccTTCAATCCTTTAACTAATTCAATTGTACCTACttaaattgcaaaaaatataaagttgAGTTTGAAAGGAAGATGATGGAGGAAAGAAGAgcagcacacagacacacacacacagacacacgcaaacagacacacgcacacaaatacacacacacagacacacgcacacagacacacatgcctatgaagtaaaataataagaagaaaaaaaaagagtgagcaACAGCAGGTTTAGTctgcacataaataaaaaagaaaaaacaaagaaaaaagagaagggccttttcattcatattataaataaataaatagaaaaatcaacaaacatatgaataatatattaaacatttaaatgcacTTAAACAAAGCCAGGTAACAATGCAATGTCCATTCATAGGTGACAGACTTTTGTCCAGACAAACAAAATCAAAAGACAAGCAATTTGCCTAATGATTTACTCACTAGATCAGAGGAGATGACGGTAAAGTTTTGACAAAAAGGTCAGCTTCTTCAGGGCAACGGAATAGTTTTGGCTTTCCATCCACTGTGACTCTCAGTGTACAGGGTTACAGCAAAGAGTATTTAATATCAGCAGCACGGAGGATCTTCTTGACAGCATCAAACTCTCGACGTTTCTTGACCAAACCAGCACTGAAATCAGGGTAAATATGAATGCGGGTGCCGCTGTAGGTTAGCACCCCTTTTGCCCTTGCCAGACGTAGGATCTTTACTTTGTCCTGGAAATGCAAGAACTTAACCAAGATGGGTCTAGGAGCAGATTGAGCATTGGAGCCAAAAATAGGAGTGCGGTGAGCCCTTTCAATAACCGGCATAGTGGAAAAGTTTTCACATCCCAGAAGCAATGGAATCATCTTGTTCATGAACACAATCATATCTCTTCCTTCACTTTTCTCTGGAACACCAATAAAGCGAAGGTTGGATGACCGGTTTCTATTCTCTGCATCTTCCACTTTGTCTTTCAAGTAGGCATTTTCTTTTTCAAGAGTTTGTACACGTTTAGTCAAATCATCAACATTGTCTTCATTCGAACTCACCCTTTGTTCAAGCTCAGAAATTTGCTCACACAATGAATTCAAAGATCCTTGAATATTTTGAAGTCCTGTTTGAATGGTCTCAGTCTTTGAGTCAAAGTGAGCAGTCATTTCAGTTTTAAACTGCTTAATTGCATCCAATATTGTTTGGAGGGAAGCCTCAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284901 lncRNA downstream 37230 35836203 ~ 35836645 (-) True G209946
TU284882 lncRNA downstream 170421 35702789 ~ 35703454 (-) True G209929
TU284877 lncRNA downstream 225666 35647402 ~ 35648209 (-) True G209924
TU284846 lncRNA downstream 565281 35308319 ~ 35308594 (-) True G209894
TU284811 lncRNA downstream 733768 35139450 ~ 35140107 (-) True G209872
TU284970 lncRNA upstream 254877 36133130 ~ 36168032 (-) True G209993
TU284971 lncRNA upstream 256531 36134784 ~ 36168032 (-) False G209993
TU284973 lncRNA upstream 257607 36135860 ~ 36136239 (-) True G209995
XR_002651811.1 lncRNA upstream 439398 36317651 ~ 36331749 (-) True LOC103047198
XR_002651810.1 lncRNA upstream 446384 36324637 ~ 36331749 (-) False LOC103047198
XM_022684026.1 mRNA downstream 610467 35172219 ~ 35263408 (-) False rnf130
XM_007245506.3 mRNA downstream 637568 35172219 ~ 35236307 (-) False rnf130
XM_007245505.3 mRNA downstream 637569 35168540 ~ 35236306 (-) True rnf130
XM_007245504.3 mRNA downstream 637570 35172219 ~ 35236305 (-) False rnf130
XM_022684023.1 mRNA downstream 706650 35147631 ~ 35167225 (-) False ctso
XM_022684035.1 mRNA upstream 811346 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA upstream 811346 36689599 ~ 36691324 (-) True LOC111195785
XM_022684365.1 mRNA upstream 911776 36790029 ~ 36792803 (-) True LOC107197706
XM_007252895.3 mRNA upstream 915129 36793382 ~ 36804302 (-) True LOC103044642
XM_007252896.3 mRNA upstream 931054 36809307 ~ 36810496 (-) True c24h12orf73
TU284750 other downstream 1123669 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 1236576 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 1241557 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 1599282 34234918 ~ 34274593 (-) True G209660
TU284515 other downstream 1661026 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 832167 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 3649380 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 3735465 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 3768101 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 4054885 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile