RNA id: TU284970


Basic Information

Item Value
RNA id TU284970
length 757
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G209993
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36133130 ~ 36168032 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACATGTCATCCAAGTCTCTAATTTTATCACCTTATGCTTTtgatgtatttactattattctAAGAAgtatacattattaataaaggAGAAgggatgtgtccaaacttttgagtggTACTGTACTTTGGTGAGCCTGGAAAAAGAATCAGAACAgctctgtactttttttttctttgtcctgTGTAAACTATCAGAACCAGTGACCCAGTGCCCTGAACGAGGAGCACGCCAATCACaatgacatcacaaaaaacaaacaaacaaataaacaaataaacaagcaaCAAAAAATAGCATGTTATTAACATATGTACATCTTGCATAATAATAactaacagtaaaaaaagtccCTTCCCTACGATTGTCTCCAGCACCGCTAATGAGGTCCAAAACGGAGCAGTTTATTTTTGGTTTGCTCTTTGAAAACTACAGTACGGCACAAACAGCGTCGCGCCGCCACGTTCCCCGAGTATCCGAGTGTCTCGCTGTCCTTTTCCTTCTAACATCGGCGCTATTCACAACGGACGTCATGTTATTCACAGCGCGGCGCTAAAACCGGAGCATCACACCGAGTGAATCATGTGCCGTGATGACTCGCGACGGCGTCGCTCACTGATTAGGAGCCCTTATAAAACAGACCCACATTACGTACATAACGCCAAGGCACtctctgtgggtgtgtgttagagtgtgtgcgagtgtgtataaagtctgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284906 lncRNA downstream 254877 35873875 ~ 35878253 (-) True G209951
TU284901 lncRNA downstream 296485 35836203 ~ 35836645 (-) True G209946
TU284882 lncRNA downstream 429676 35702789 ~ 35703454 (-) True G209929
TU284877 lncRNA downstream 484921 35647402 ~ 35648209 (-) True G209924
TU284846 lncRNA downstream 824536 35308319 ~ 35308594 (-) True G209894
XR_002651811.1 lncRNA upstream 149619 36317651 ~ 36331749 (-) True LOC103047198
XR_002651810.1 lncRNA upstream 156605 36324637 ~ 36331749 (-) False LOC103047198
TU284984 lncRNA upstream 171281 36339313 ~ 36345823 (-) True G210004
TU285002 lncRNA upstream 335607 36503639 ~ 36503895 (-) True G210012
TU285004 lncRNA upstream 449552 36617584 ~ 36617808 (-) True G210014
XM_022684026.1 mRNA downstream 869722 35172219 ~ 35263408 (-) False rnf130
XM_007245506.3 mRNA downstream 896823 35172219 ~ 35236307 (-) False rnf130
XM_007245505.3 mRNA downstream 896824 35168540 ~ 35236306 (-) True rnf130
XM_007245504.3 mRNA downstream 896825 35172219 ~ 35236305 (-) False rnf130
XM_022684023.1 mRNA downstream 965905 35147631 ~ 35167225 (-) False ctso
XM_022684035.1 mRNA upstream 521567 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA upstream 521567 36689599 ~ 36691324 (-) True LOC111195785
XM_022684365.1 mRNA upstream 621997 36790029 ~ 36792803 (-) True LOC107197706
XM_007252895.3 mRNA upstream 625350 36793382 ~ 36804302 (-) True LOC103044642
XM_007252896.3 mRNA upstream 641275 36809307 ~ 36810496 (-) True c24h12orf73
TU284750 other downstream 1382924 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 1495831 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 1500812 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 1858537 34234918 ~ 34274593 (-) True G209660
TU284515 other downstream 1920281 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 542388 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 3359601 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 3445686 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 3478322 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 3765106 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile