RNA id: TU284984


Basic Information

Item Value
RNA id TU284984
length 6402
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G210004
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36339313 ~ 36345823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTTCACaacaaatgcttaaaaaaatataatacatttatacagaaatttaatctaaattaatttagatgtttcaaataaatatattttgaaattgACTTCAAGAATTCATGTAGATTAATCTGCTTATTTGATAAACTGAAGTATGTAtatacagcgctggaaaaaaaaataaaaataagcgaccacttaaaaataatgagtttctttgatttgaccaaattgaaaacctctagaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactgaacttcttgaatttttgcaccaggagtaaaggcataaaattatccaaaagcagtgtgtaagactggtggaggagaaattgccaagatgcataaaaaactgtgattaaaaaccagggttattccaccaaatgttgatttctgaattcctaaaacttgaaaatgagcatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttgttttgttatttctgccatttctcatttcctgcaaatagatgctctaaatgacaatatttttttgtaatttgggagaaatgttgtctgtagtttatagaataaaacaacagtgttcattttactcaaacatatacctataaatagcaaaatcagagcaactgattcagaaactgaagtggtctcttattttttacagagctgtatcttATAATACATAAGGGACGAGCTGAAGATATACAAATCCAGAACTCATTCAGAAACACTGCACAGCCCATCTCTAAACTCTGCAGCGGCCCACTGGGCTCGATTCTGAGTGTTCTGGGTCCAGTTTTGTGTTCTTGTCTAAGTTCAGGGAAGCGTGATGAAAACATGGGCCGTGGTAATGGAGtgtactctacacacacacacacacacacacacccaacactgTTACCCACTGCAGAGAGGACATCACAGCAGCTTTAGGTGAAATGTCCAAAGCTCCTCCCCCTGACctgctgctgtttttccttcacaTATAATTGGGTTCAGTACTGCAGTGTTCACATTAGCATATTCAAATCTGAATTAAGAAGTGGAATAATTCAGATTGTGTTCACTCTGCAGCCTGATTAAAACGAACTGTATCAACAGCACGTTTCCTGTTTCCACCTTAATGAGTCATTTCTTTGTTAAATCACGGAAAGCGCAAGagtaggacacacacacacacacacacacacatgcacacgcgcacacacagcTGTCAGTCAGTGGAATGTGTTCTGCACCAGAGCTCACACAGCAAGCTGCTGCCGCTTCATCAGGatgcaaaaaaagtgtttaaacagatggagaacacacacacacatacacacacactatagcattgtgtgtgtgcgtgtgcatatgtgtgtgtgtgcctgtgtgagACAATGGTTTAACTTTAAAGACAATACGTGGATGTCTTATTGtggtgttttattcagtttccacacacacacacacacacacacacacacacacgcacacacactccccccaGACTGATATCTCCCTGCAGTATCTGTGACAGTCGCTCTCCAGGGATAAACTCCAGGTTTTCCCAGCGGGAGCACAACACTGCCTAAACTGTCAGGAAGCGTttgcatccacacacacacacacacacacacacacaaacactttgctgtaagtgtgtgtgagtatcaGTGATGAGCCGAAGAGGAGCTGGagtgattaaaaaaagagaggtaATATAAACTGTACGATGGACAAATATTCTGCATCAATTcttaaaatgagcaaaaataaACATCTGCATTGTTCCTTAATGTGACCTAAACATTCTgcatcatttattaaaattagaatTATTACTTACTGATTATACATATAATTAACTATAGGTTTTGCATAATTTATTCAAATTACTCAAATCTTCTGCATCATtgtttgaaatgtaaaattattaataagttcttaaaattagctaaaatgttctgtatcaTTTCCTATAACAAGCGCACTTGTCCGcaaatactgtgtgtgtgtgtatgagaatcATCGGTGAGCCAAATTGAGTTCAGGTTTGAATCATTACAAATTCAGTTACAAAtggaataaagaaatatatatatatatatatattgtgtttagaTTTCAGTAAAATGGTGTTGGATTTACTGTATTTCCAATTCATACAGAATAGGATTGAATCCAGCAAATCTAACAACAAAATTACTGTTAGGGTGTTCTCGCACTCGTTCTCGTTCTCACGGTTTGGTTGCATGGTGCTGAAGTCACGGTTCCACATACATTGCGACTTACTGTGtactcccgagagggggtgctttttctggcgggggtgctgaattcggcacaacaccgctaTGTTTGTTAACAGGAACTTTGCATCACTGATTTCATCTTGTTCCATGCTTGGGCGTGGATAGCGCTCACACTGCATGCGTACTGTGCTCAAATCGTGCCTTACTGATGTGCATCTGTGCCTGGCAtggattgcctagtgtgagaGCACCCTAAGTCACAAAGTTAAGATTTGGAAGGAATTCCGCTGAGCTGAATGATTAACATGGGACTGTTATATTTTAgaaattggtttattttttgaaatatccccaaatttatttattttttattagaaaagaTTGAACAGGAGCTTCAGCCACATAGAGTATGACTCTTCCAGACCTGTGTTTGTGATAAACCCTCCCAGCGGTGCCGGTCCGGAGGTTGAGAAGCTGCTATCGGGCTGCTGGTTCTGTCACTGAGAGAAATGGCCTGTTTGCTCGGGCCGGACCTCGGCTGATCCCAGCGACTGCATTAGACAGTCCGGTGTTTGATCTGTAAATGATCAAACAGGAATTCTGACAGGAAATGGATGAACTGGTGCACGTCGGGTGACGGCCCGGACACGGGGGGAGTGATGGCGGGGGGATTCTGTGTTTACTCTGCTTTAGCGGTACAGAGGGGAGCGGTGCTAGCTTCTGTTATCTTAGCATCACTCTGTGAAAGCTTTATTCAGTCTGTATGAAACCAGAATACTTTAAAGAACCAATCACAGGTTTACATGGCTCTCTATGCTGATAGAAAGGCTCTGCAGATCTTTCTTTAAAGAAGCTTTTACAAAATGATTCCATGTCAACAAAGAGGGTTCCACTAGATTAACATAacaaataacctttttttaatatatttatatatttttgaccaAATATTGTTAAACAACCAAGATTCCAAAAAGAGGTGCTGCCACTATCACCTGAGGATTGCGGGATCATAATTTGAATCCCGGGTCGTgttgcttctccatcagcagccggagtctgagagagtacagttggTCATGCTCTTTATGGGTGGGTGCAGTGGGTTGGTGCTATCTCCCGTCATTGCTCCTCATGTAATGTTGGTGAGTACAGGCATCTgttgatgtatcagagctggagaCACGACGCATGACAGTGGGGactaatgagtgggtggggtttTTGACCAAATTGGGGATTTAAAAGGgataaaacttgaaaaaaaagaaaatcaattcaAATGTTTCtagaagccaaaaaaaaaacacttttggttcCTTAAAAAACttccttgataaaaaaaatgaagtggaAAGTGGAAATAACCTTTAGCAATAAAGGTTCTTTGATCTGTTACAATAGTGGAACCCTATTTGACACTAATATGAACTAGATAATGAAGCACCAACACTAAAAAGGTTCTGTAAAGAATTGTTAAAgcatccaaatgtttttttctttgtttaagtTTGAAAACTGGTTGAAATGACTGATTATGATTAACATTGGTACTGCGTTTTATGAAGACCTTTCGAACACTAGTAGTAGGTGGGATTAGCATCTGTTCCTCACTCCTGTTAAGTAAGAATAGCGTAGGTTTgcattgtttttctgtttaattaataaattaatagacATTAGGATGAACAGATTGAAAGTGCGCGATGCTGAAATTTCACCTTGAATTAGTTTGAAACTATTAGGAAAGTTAAATGAAGTTACAATAACGTTCTGGGTTTGTTTGTACTTTCCTACTTTCCACCATCCAAAGGGCACTGGTCAGTCTGTCCCAGTACTGGACACACACTGGAGGACAGGTGGGTCCACGTTGGGGTCACTTATGGCAGATTGCGTGTGGCGTATTCTTCAGTTTTCCCACTGATCTCAGCTTCTGTTCTCTCGCAGTGCTGCCGCAGCCACCACTGTTGTCGCCGTCACACGTTATTAATACCACATTAACCCCTGCAGAACTCTGAGCCCCACCAGCAGGTCCAAACCTCCACCCCGATATCAGCTGACGTAACTATAACAGTACCGGTAGCTCTGTTTTCTCACGTGTTTGTAATAAGTAATAAGCCTCAAAATGAGAAGCTCTATGGTGTTTTTAAGGAGTCTTGGAGCAAGAACCTTCTCTGCGAGATGATTCTGTAATCGTTCAGTAATCACCTGCTGATGATTCGTTGATGAGGGTGTGTATGAATGTGCGTTCTAACTCTTCTCTAGACCCGAGGGTTCTAATCCTACAACGTTAGCCTCAAGTGCGAGGGTTTTGCTAGCTCTTacatcttcaaactttaaacaaattttaaagTGGATTTATTGTtctacactgtacacactgtagtACAAGCTGTACTGCTTTGATTAACGCAATGGAACCTTCTGGTGATGAATACAGTTCATGATTAAACATTGTCTGAGATTGATCCACCGACCATGACatgtatccatctatccatccatccattcaaacATACAACCATCCAGCCAATTACGACAAGTCTCTGAAGCATTCTTTCACACATAAAAGCAATTTTTGGGGAACAGGTAGAGCGACGAGGACAGAGTGGTCCGTCAGATTGTTTGTACAGTCAGGATTTAAGATGCCGCACAAGCGAAAACCGGTGGCGCCTCCCTGGCCGTTAAAGATCACAGCAATGACACGTGAGAGACGGTGGAAAAGTGTCTGATGGAGCCACCTGCTCTCCGTAGAAGTCCTGCTGAATCCGCTGATGGGAGCGGTGGCAACTTTTCAAATCTGACAAATCGCATTAGACTGACCTGCTGTTTTCCATTTGTTTTCCCCCAGTGTTTTGGTTTAAATCCAAATCCCGAGTGTGTTTGGGCGATGCTTGTGGGTTATGGTggtctacttcttcttcttctacttcttctttttcttcttctctactGTGATGAATCCagccagtgctaatgctaatgtctCCCAGGCTGGTCGCTTTGAATTCGGACCAAAtgtcatatatatttacatcacTGTACATGAAGGGGGAAACCCCAGCGAGTAAAACGTTTCCTGCTGCCGGAAacacttttaagactttttccgTGCTCGAGGAAGGGTGTCCAGTTTGACGTTGATCACCAAACGTCAAATCGGCGGCAGCATTATGAACTGTTATGCACATCGTCCCTACAGGCAGGCATTCCACTGCATGGTGGGCGACAGTCCTGATGTGtgactgatgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtatacatatacaGGTCTTCAGTGTACATACTCTTAACTAAGCTTGTCCTTAGTTAACCAAAATAAGAGTCTAAAAAAGTAacgaaagagaaaaaaagcaaactttACCTATACAGCTTACGTTAAATTATCACAAATTCGGATAAAAACAGTACTGTAATTACATTCTCTCGGCAGAAGAAGTTTGATTGAAAAGTGTGTATCCTTTGTACGATATTCACAAACACAgactctctgattggctaggctTTCTACATGACGTTGTATAAAACGGGATTCTTCGTCCAAAAACACAGAGGAGGTGGGTGAAGGAGGAGGACGGTAGAAACGAGGGTCGGGGTGTCGGAGGTGACTTTCGGAGGCGATTCGGATCCCTCCTCCTATAGGCAGAGCGGAACGCAGGTAGTGAGTGCACCTGTTGCGTCAGGTAAGGGCAACCCGCAGGCAGAAGCGGGAAACTTCACAGGTAGATCTCTCTCTTGGAGCCCTGGCTGGACGGAGTGGTGGCCGACGGGTAGTCCGCCGTCTGGCTCAGCGGGATCTCCTCGAGTGGGCAGTCTTTGCCCGCGTCGCCACCCGCAGAGTAGGCACTGGTGTACGGAGGCAGGAAGCGGATGGTGCCCATCTTGCTCCCCCCGCCGTGCTCCTCCCCGATAGGCTTGGGACTCCCGTTGGCCATCAGCTGGTCCTGCGGCTCCCTCTCCTGGTAAGGCACGAACGTGGAAAGTTTGGGGCCGCCCTTGCTTGCGGTTTTGTTGCGGTTTGGTGACGGCTGCCCGGGCATCCAGCAGGAGTCGGAGTGTCCGAACTCGGTGCACTCACGCGTACAGGTTCCCGTCATAGCCACGTCCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651811.1 lncRNA downstream 7564 36317651 ~ 36331749 (-) True LOC103047198
XR_002651810.1 lncRNA downstream 7564 36324637 ~ 36331749 (-) False LOC103047198
TU284970 lncRNA downstream 171281 36133130 ~ 36168032 (-) True G209993
TU284971 lncRNA downstream 171281 36134784 ~ 36168032 (-) False G209993
TU284973 lncRNA downstream 203074 36135860 ~ 36136239 (-) True G209995
TU285002 lncRNA upstream 157816 36503639 ~ 36503895 (-) True G210012
TU285004 lncRNA upstream 271761 36617584 ~ 36617808 (-) True G210014
TU285074 lncRNA upstream 387967 36733790 ~ 36734206 (-) True G210065
TU285085 lncRNA upstream 419591 36765414 ~ 36767551 (-) True G210074
TU285088 lncRNA upstream 423846 36769669 ~ 36770997 (-) True G210076
XM_022684026.1 mRNA downstream 1075905 35172219 ~ 35263408 (-) False rnf130
XM_007245506.3 mRNA downstream 1103006 35172219 ~ 35236307 (-) False rnf130
XM_007245505.3 mRNA downstream 1103007 35168540 ~ 35236306 (-) True rnf130
XM_007245504.3 mRNA downstream 1103008 35172219 ~ 35236305 (-) False rnf130
XM_022684023.1 mRNA downstream 1172088 35147631 ~ 35167225 (-) False ctso
XM_022684035.1 mRNA upstream 343776 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA upstream 343776 36689599 ~ 36691324 (-) True LOC111195785
XM_022684365.1 mRNA upstream 444206 36790029 ~ 36792803 (-) True LOC107197706
XM_007252895.3 mRNA upstream 447559 36793382 ~ 36804302 (-) True LOC103044642
XM_007252896.3 mRNA upstream 463484 36809307 ~ 36810496 (-) True c24h12orf73
TU284750 other downstream 1589107 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 1702014 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 1706995 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2064720 34234918 ~ 34274593 (-) True G209660
TU284515 other downstream 2126464 34170767 ~ 34212849 (-) False G209640
TU285068 other upstream 364597 36710420 ~ 36710743 (-) True G210059
TU286079 other upstream 3181810 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 3267895 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 3300531 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 3587315 39933138 ~ 39940047 (-) True LOC103023530

Expression Profile