RNA id: TU285132


Basic Information

Item Value
RNA id TU285132
length 2608
lncRNA type inter_gene
GC content 0.44
exon number 11
gene id G210107
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36815671 ~ 36822106 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttACAATGAGATTGACAAAATAGCACCAATAGTGTTTCATAtaaacagtaaaagcacaggACTGCAATCATAAAATCCACAACGCATCAGGtgacataataatataatgagtGGCTGTCTTTTACATGTGCTGTATTCTTTCACAGTTTTACAAATACCAGCGCTACCAGTAATTTCAAACCTCTTAAAATGTACCTTTAAAAACGTACATTGACATAAATTGTGGAATCATTGCATGATTTCATATGTGCCACTTGCTCAAGCACCTTATATCTTTGTATGTGAAagactattaaaaaaagatgaacTACACTCGACCCAATCAAATTACACACTTTGACCTCTTTTGATAAAATCAAGTATCAGTCCCTGATATCACAAAGCATGAAAACAACTTCAGCAGTGCTGACCCTTATACACTACACAAAAGcattagataaaaataaaagcaaaaatagtTCCATAGAAATACTAAGTCCTAAAATGTCTACTTCAAATTCATtgcaaaaaaatctttattcgTCTCTTCTCAGACGAAGAGCGTTTCATGCTAACGGTCTTCAGCTGAAAGACTGAGGTACAGTTTCTTTATAAATGGAGCAGCAGCTGATTTATCCCTGTTCGTAGCTCCAGTAGTCGCCTCCGTGATTTTGACATCCATCCTGTGGAGTAATTTTGCACACAACAATAGCAGTTGTTTTATAATACCCATGACTGTAACAGGGCTTTATAATATATGAGCAAAGAGAAAAATTAGCACACTCCTTGAGGACTCCTGAACTGGATGAAGCTAGTGAGAGGCACTGTGTCCGAGCTGAAAGTGAAAACGGGAGCTCTGTCTATAAGGCTGCATAAAAAGGCCCTTACCAAGCCTCATACAGCCCCTGCAGGCGCTTGTGAAGAGCTTCCAATGTCCGGAATCTTGTCAGTGAAAGACTCGTTCATCCACTGTCCCCCTGGAACCTGACCCTCCTTGTTCTGATTTCTGGGTTCCTTCTCCGATGTTTCTGCCTGTCCAGAAGAGAACGGACAATGTCCATTGCTCTGTCCTTCCTCAACTCCAGGTTCTCCATACGCCCCTCCAAAGGCAGCTTCGTAGCCAGGATCATACTGCTCTTCCTTGATGGCCATCCTCTTGGCATCCTCTTTAGCCAGGCCAAGATCGAAGGAATAATTGACTTCCTCCACCTCTTGAGGTTTAGCAACACCCTTCAGTTGGTCTCGAAGTTCCCTGAGCTTGATGTAGAAGTGCACTTTATCCTGAGCTCGGGGGAACTGGGCACAGCGAGCACTGGACGAGGGCATCAGGTACAATGCCGTTTCAGAGTCTGGAATCTTGTGAGGCTGTAAGCCAAATTCCAGAGTTTTTGGCTTTTTCCCAAATATTTCTCTACAGAACATTTCATAAATACATTTTCCATTGAACACAGCTATGAGTGGCTTGAACTGCTTTATCTTCTCCACTAAAATTTTGCCACCTTCTCGAAGCTCTTTACTTGAGAGATCTTTGCTTCCGGGTGTTGCTCTGGCTACCATGTTTGTGAAGCCAATGCCGTATTTCTCAGGAAGAGTCTGGTCATGCATATGGTTCAGCAGCTGGTCAGTGAACCCAGACAGGAACAAGCACTTCCAAAAGTGATTTCCAGGTCCAGGGAACCATCTTCCAATATAGGCTGCCATTAATCCTGGATTGATTCCAatAATCACATAATCCAAGTTGGGCGTAAGGATGTCCGGCAGAGTCTTTTTCATGACCTCCTCTTCTGACATGCCCTTGAAGCGATCTATTTTCCTCTTTACTTTCTTGAAGGATTCATCAATCTTCTCTTGAGCACCTTCAATTGGCTGGCCATCTTTGTCTAGCTTGGCTTTCTTAGGCTTGGGGCCAGGTTTAGCCTTGGGTTTAGGCTCTGCTTTAGGTTTGGGCTCTTTGTTTGCAGGTCTGCCCCTCTTCCCTTTAGCAGGAGCTTTGGCTTGCTCTGGAACACCAGCCTCTAGCTGGGCAGGCATCTGCTGCTGCAGAGGCATCTGTGCCATGACCCCATCTTCTCTTGGTCCCTCCATGTACTGGCCAGCATTTCCATTAGCCATATGAGAATACTGAGCGTGAAGTGCCTGGAGATGTTGTTGCGCTGACTGTACCCAGTGCTGGACATAATCCGAGGGGGCATGGGGGGGCAAAGATCCATAACTCCTTTCCTCCATCTTTAGGGTACGTTGTAGTATAAACCGATACTGATATTAATCCGGTAAAACGTTTTATTTCAAGCTAAACAAATCCTGTTAAAGGCAACAAAGACCCGCAGCACACAGCAGAAGCGCAACTTGGCACTGGAACATACCAACATGAGATTGAGGGGTGCTGCCGGAGACCGGTTCACTTACGACTTATACAGCTAAACAATGGCTGATTCGGTCGCTGCTCAAACaaacagatatacagtattggTGCTTTCCACATACGTGAGCAGTTCTTAGTTATCACTTGTGTGAAGTATATTTTCTCTTTGCACATTTTACAAGTTCAAAACACCCCTTATTGTGGAGTCGGTCCTCTCCCCTGCCGTTTAAATGTTCTGAAGCCCTGTTTCTATTGGCCTCCACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285129 lncRNA downstream 5187 36809311 ~ 36810484 (-) False c24h12orf73
TU285135 lncRNA downstream 10219 36805131 ~ 36805452 (-) True G210110
TU285088 lncRNA downstream 44674 36769669 ~ 36770997 (-) True G210076
TU285085 lncRNA downstream 48120 36765414 ~ 36767551 (-) True G210074
TU285074 lncRNA downstream 81465 36733790 ~ 36734206 (-) True G210065
TU285146 lncRNA upstream 49473 36871579 ~ 36871944 (-) True G210120
TU285245 lncRNA upstream 285594 37107700 ~ 37108089 (-) True G210169
TU285249 lncRNA upstream 305588 37127694 ~ 37128205 (-) True G210173
TU285275 lncRNA upstream 342943 37165049 ~ 37167366 (-) False LOC103033395
TU285279 lncRNA upstream 406155 37228261 ~ 37228612 (-) True G210197
XM_007252896.3 mRNA downstream 5175 36809307 ~ 36810496 (-) True c24h12orf73
XM_007252897.3 mRNA downstream 5746 36809307 ~ 36809925 (-) False c24h12orf73
XM_007252895.3 mRNA downstream 11369 36793382 ~ 36804302 (-) True LOC103044642
XM_022684365.1 mRNA downstream 22868 36790029 ~ 36792803 (-) True LOC107197706
XM_022684035.1 mRNA downstream 124347 36689599 ~ 36691324 (-) False LOC111195785
XM_022684040.1 mRNA upstream 177 36822283 ~ 36827999 (-) False LOC103023613
XM_022684039.1 mRNA upstream 177 36822283 ~ 36827999 (-) True LOC103023613
XM_022684037.1 mRNA upstream 5785 36827891 ~ 36836649 (-) True LOC103023303
XM_022684046.1 mRNA upstream 129775 36951881 ~ 37003635 (-) False LOC103039285
XM_022684044.1 mRNA upstream 129775 36951881 ~ 37000317 (-) True LOC103039285
TU285068 other downstream 104928 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2065465 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2178372 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2183353 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2541078 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2705527 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2791612 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2824248 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 3111032 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3539152 40361258 ~ 40363237 (-) True G210991

Expression Profile