RNA id: TU285135



Basic Information


Item Value
RNA id TU285135
length 322
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G210110
representative True

Chromosome Information


Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36805131 ~ 36805452 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ctgcgtcttcagtaacgtctcggacttcactatgtgtacaaaggacaataagtggcaaacaaggcgttttgtgaagcagaacttttaataatatgcacacaaccgtggtgatcacaggtaataaacataacttacttttcagaagcttgtttgccacttattgtcctttgtatacagctggtacagcatcttttaaggtcccccgggaaaattccgttgtgttgtgactcacttccgttgtgttgtggttctatttgcagcacgtttttctatttgctgcgcctgtgttgtaattttgatggatgtgttttgtgcttttgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU285088 lncRNA downstream 34134 36769669 ~ 36770997 (-) True G210076
TU285085 lncRNA downstream 37580 36765414 ~ 36767551 (-) True G210074
TU285074 lncRNA downstream 70925 36733790 ~ 36734206 (-) True G210065
TU285004 lncRNA downstream 187323 36617584 ~ 36617808 (-) True G210014
TU285002 lncRNA downstream 301236 36503639 ~ 36503895 (-) True G210012
TU285129 lncRNA upstream 3859 36809311 ~ 36810484 (-) False c24h12orf73
TU285132 lncRNA upstream 10219 36815671 ~ 36822106 (-) True G210107
TU285146 lncRNA upstream 66127 36871579 ~ 36871944 (-) True G210120
TU285245 lncRNA upstream 302248 37107700 ~ 37108089 (-) True G210169
TU285249 lncRNA upstream 322242 37127694 ~ 37128205 (-) True G210173
XM_007252895.3 mRNA downstream 829 36793382 ~ 36804302 (-) True LOC103044642
XM_022684365.1 mRNA downstream 12328 36790029 ~ 36792803 (-) True LOC107197706
XM_022684035.1 mRNA downstream 113807 36689599 ~ 36691324 (-) False LOC111195785
XM_022684034.1 mRNA downstream 113807 36689599 ~ 36691324 (-) True LOC111195785
XM_022684026.1 mRNA downstream 1541723 35172219 ~ 35263408 (-) False rnf130
XM_007252896.3 mRNA upstream 3855 36809307 ~ 36810496 (-) True c24h12orf73
XM_007252897.3 mRNA upstream 3855 36809307 ~ 36809925 (-) False c24h12orf73
XM_022684040.1 mRNA upstream 16831 36822283 ~ 36827999 (-) False LOC103023613
XM_022684039.1 mRNA upstream 16831 36822283 ~ 36827999 (-) True LOC103023613
XM_022684037.1 mRNA upstream 22439 36827891 ~ 36836649 (-) True LOC103023303
TU285068 other downstream 94388 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2054925 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2167832 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2172813 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2530538 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2722181 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2808266 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2840902 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 3127686 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3555806 40361258 ~ 40363237 (-) True G210991

Expression Profile