RNA id: TU285249


Basic Information

Item Value
RNA id TU285249
length 512
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G210173
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37127694 ~ 37128205 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtacactgtaaacccagaagttgtttgaactcaaataaattaagtctgttttacacaaaattggagatttctaaacaatactcaacttttttgagttgtgggcacatatatacattaaaactgagatctttgagttgaaccaactcataataactgagtttagtctgttgccattaacagcttcttttccattggcttctgtcacaatctatttgcatactgggtgtgtccaacagttactgacactcaccatcagtgtgtagtgattcacccggggctaccttaggtaaacttgtagatcacagattatgattaaatacttgctctctgtgttgtaggctgtagaacaagcatcatttactgagctgcagtaactctgtgttctcgctgtgctctcagtacttttaattctttactgttttctttcatctacttttctatgtgtatttaaaacaaatagttgaatgaaaccagaaagaagactaaatacaagttcaggaaaatattaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285245 lncRNA downstream 19605 37107700 ~ 37108089 (-) True G210169
TU285146 lncRNA downstream 255750 36871579 ~ 36871944 (-) True G210120
TU285132 lncRNA downstream 305588 36815671 ~ 36822106 (-) True G210107
TU285129 lncRNA downstream 317210 36809311 ~ 36810484 (-) False c24h12orf73
TU285135 lncRNA downstream 322242 36805131 ~ 36805452 (-) True G210110
TU285275 lncRNA upstream 36844 37165049 ~ 37167366 (-) False LOC103033395
TU285279 lncRNA upstream 100056 37228261 ~ 37228612 (-) True G210197
TU285314 lncRNA upstream 170909 37299114 ~ 37301802 (-) True G210223
TU285331 lncRNA upstream 181173 37309378 ~ 37314616 (-) True G210235
TU285339 lncRNA upstream 195202 37323407 ~ 37323626 (-) True G210242
XM_022684047.1 mRNA downstream 21237 37100295 ~ 37106457 (-) False LOC111195788
XM_022684048.1 mRNA downstream 22634 37100295 ~ 37105060 (-) True LOC111195788
XM_007246459.3 mRNA downstream 40715 37083976 ~ 37086979 (-) True polr2g
XM_015605100.2 mRNA downstream 45488 37072586 ~ 37082206 (-) True eef1g
XM_022684366.1 mRNA downstream 88963 37003908 ~ 37038731 (-) True LOC103034997
XM_007246456.3 mRNA upstream 36829 37165034 ~ 37204385 (-) True LOC103033395
XM_022684049.1 mRNA upstream 78034 37206239 ~ 37218291 (-) True LOC103033714
XM_022684050.1 mRNA upstream 152636 37280841 ~ 37285730 (-) True LOC103038966
XM_007246443.3 mRNA upstream 263865 37392070 ~ 37407429 (-) True ccdc69
XM_007246442.3 mRNA upstream 286387 37414592 ~ 37421150 (-) True gm2a
TU285068 other downstream 416951 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2377488 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2490395 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2495376 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2853101 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2399428 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2485513 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2518149 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 2804933 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3233053 40361258 ~ 40363237 (-) True G210991

Expression Profile