RNA id: TU285275



Basic Information


Item Value
RNA id TU285275
length 1095
lncRNA type sense_over
GC content 0.34
exon number 2
gene id LOC103033395
representative False

Chromosome Information


Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37165034 ~ 37204385 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTCAATGTCTATAAGAAGTTTGGTGCATTCTCACCATGTCGGCATGGGTTTCCTGTTTGCTTACAACATAGATGGTAGGTAAATTGGCTATGCTAAGTTGCCcctaagtgtgagtgtgtgtgtgtgtgtgtgtgtTTGTGTGTCTTTTAGTGATCTGTTTTAGTACATGTTTTTGggccaaactaaacaaaaataagtgCCATCTCACACTTCTCAtcttttgaaaatatatttccAGCTTGAATTACTGTTTCACATCCTTGGTTTTTATATTGGTTTTTAAGTATTACTTCTCCAaattcatttattgtttattttttaatataaacggTGCCATAAACCACAATAAGCCCAGTCTGCATGCAAAAACTGGGCATTAACACAGTATTGTTCTTGtacagcaaataaaataaaacaatctgTATTACATACATCTTTACCAGGAACATGGTCAGTTCTAGAACTTTCGCCTTATTTTTGCCTGTAcaatttgttgtatttattaatttatttatatattcgcCAACATTCAGACCAATGActctgtatatatgtttatatacagtcattcaTTCAGACACATTGTCGTATGCAAGCAGAATGGAGCTTTTTTCAGCTCGACTTTGATCAGTAGAGGGCAGTGTAGATTTAGCACATAAATGCTCGACAATCTTGTTTGTTCCACTTAACTCTTCTCTACAGACATCTACAGATCTTGTATAGTACCTTATGTATGCTCTGCTACTGTATAATATTAATGAATTTGACCTATTTtctgctgatgtttttttttatatatatgttgagTTATTGTTCGTGCCATCCCCTTTTTGTTCTCTTGCCTGGAATGCAAAtgcttttgttttactgttataTTCACTTTTTGCTCTGATAGCATATCAGTATGCTTGTTGGTTAGGCTAATGTTGTAATAATGTTGTATatggcagtatttgttcagtgTTCTAAAGCTTGTGGTAGGATTGAAATGTCATTGTACACTGTAAAGGTTAAGGATCTTCTAGTTATAACTGCAGAAAATTTTGGTTTTGCCAAATGTGTTACTGAAACTGGAAaagtatattgaaatatata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU285249 lncRNA downstream 36844 37127694 ~ 37128205 (-) True G210173
TU285245 lncRNA downstream 56960 37107700 ~ 37108089 (-) True G210169
TU285146 lncRNA downstream 293105 36871579 ~ 36871944 (-) True G210120
TU285132 lncRNA downstream 342943 36815671 ~ 36822106 (-) True G210107
TU285129 lncRNA downstream 354565 36809311 ~ 36810484 (-) False c24h12orf73
TU285279 lncRNA upstream 60895 37228261 ~ 37228612 (-) True G210197
TU285314 lncRNA upstream 131748 37299114 ~ 37301802 (-) True G210223
TU285331 lncRNA upstream 142012 37309378 ~ 37314616 (-) True G210235
TU285339 lncRNA upstream 156041 37323407 ~ 37323626 (-) True G210242
TU285416 lncRNA upstream 418220 37585586 ~ 37586656 (-) True G210306
XM_022684047.1 mRNA downstream 58592 37100295 ~ 37106457 (-) False LOC111195788
XM_022684048.1 mRNA downstream 59989 37100295 ~ 37105060 (-) True LOC111195788
XM_007246459.3 mRNA downstream 78070 37083976 ~ 37086979 (-) True polr2g
XM_015605100.2 mRNA downstream 82843 37072586 ~ 37082206 (-) True eef1g
XM_022684366.1 mRNA downstream 126318 37003908 ~ 37038731 (-) True LOC103034997
XM_022684049.1 mRNA upstream 38873 37206239 ~ 37218291 (-) True LOC103033714
XM_022684050.1 mRNA upstream 113475 37280841 ~ 37285730 (-) True LOC103038966
XM_007246443.3 mRNA upstream 224704 37392070 ~ 37407429 (-) True ccdc69
XM_007246442.3 mRNA upstream 247226 37414592 ~ 37421150 (-) True gm2a
XM_007246438.3 mRNA upstream 391328 37558694 ~ 37625939 (-) True LOC103027906
TU285068 other downstream 454306 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 2414843 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 2527750 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 2532731 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 2890456 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 2360267 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 2446352 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 2478988 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 2765772 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 3193892 40361258 ~ 40363237 (-) True G210991

Expression Profile