RNA id: TU285779


Basic Information

Item Value
RNA id TU285779
length 903
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G210580
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39022746 ~ 39023668 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTACAGTACACAATCATTAAATATGGTTAGTATACCAGCTATATAATGTATACAATGTACAAAATTGTACTAAAAAAGATAAACCTTCAGAAATTCCTCTGTGAGGGTATCTGTGTGTGAGTACAAATCATATGCTCATCCCCATATGATTGTTTATTcatatagagattttttttctaaagattATAGCTGCATACTGCCCATCATACACATATAGAGCAAAAGCAATATTTGACATTTACTTTTTCAAATGtccataagaaaaaaaagagggaaaaaagtgAATTTGGACCTTGAACCTTTGGACCTTGGCACCATGGAGGGTTACAACAACAGAGGTATACTTCAGATACACACAGATAATAAAATCCATCATATCTTGGAATAAGGCCATGTATTTTGTTCAATGACATGCATTGTAAACAAGCAAACATAAAAATTGgcaacagataaaaacagacaCTTAATCAAATAATCAGCTCTAATATCCATTAATGAGCAAAATCTATGAAAAATAATCCATCTCATTCCTTTTCTTAGTGTGCTcagttcatttaaaaacacttaaGATCTGTAGAAATGTGTAACAGTCAGAGAAGTATACTAAAACAGTGAGGTGAAAAAAAGTGAGGTGTTCTTCCTCCTTCCACCAAACTCCTTCAGCTACGCCATGCCTCGCCTCAGGCCAGTGACGGAAGAAAGGAGTCGAGAGCAGAGGGATGTGTACATCACGTAGTGTAAAGAGGACTTTAACTGTGGATATAAGAGGAAAAAGAATGAAACGTGTGTTCTTGTGAGGCCTTGTGAGCAGTCCTGTTGTGAGCTTCACTCCATTGTAGTATTCTGGCTTTGGTAGATGGAAGCCTTGTCCTTCAGAAGATCCAGACACAAGCGACAACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285774 lncRNA downstream 36331 38985708 ~ 38986415 (-) True G210576
TU285770 lncRNA downstream 40787 38981314 ~ 38981959 (-) True G210573
TU285718 lncRNA downstream 89084 38837739 ~ 38933662 (-) True LOC103046144
XR_454525.3 lncRNA downstream 89652 38837452 ~ 38933094 (-) False LOC103046144
TU285793 lncRNA upstream 52469 39076137 ~ 39081597 (-) True G210590
TU285794 lncRNA upstream 52469 39076137 ~ 39081597 (-) False G210590
TU285817 lncRNA upstream 116439 39140107 ~ 39144431 (-) True G210607
TU286036 lncRNA upstream 358272 39381940 ~ 39452086 (-) True G210749
TU286034 lncRNA upstream 361208 39384876 ~ 39452086 (-) False G210749
XM_022684068.1 mRNA downstream 6716 39012278 ~ 39016030 (-) False hnrnpa0
XM_007246404.3 mRNA downstream 6716 39012278 ~ 39016030 (-) False hnrnpa0
XM_007246403.3 mRNA downstream 6716 39012278 ~ 39016030 (-) True hnrnpa0
XM_007246408.3 mRNA downstream 11310 38998864 ~ 39011436 (-) True klhl3
XM_022684067.1 mRNA downstream 13376 38998864 ~ 39009370 (-) False klhl3
XM_007246469.2 mRNA upstream 2477 39026145 ~ 39034037 (-) True LOC103037382
XM_015605091.2 mRNA upstream 121168 39144836 ~ 39147132 (-) True LOC103043921
XM_007246396.3 mRNA upstream 191542 39215210 ~ 39218755 (-) True eif1ad
XM_022684070.1 mRNA upstream 197481 39221149 ~ 39235748 (-) True LOC103042155
XM_007246395.3 mRNA upstream 197481 39221149 ~ 39232431 (-) False LOC103042155
TU285068 other downstream 2312003 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 4272540 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 4385447 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 4390428 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 4748153 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 503965 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 590050 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 622686 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 909470 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 1337590 40361258 ~ 40363237 (-) True G210991

Expression Profile