RNA id: TU286035


Basic Information

Item Value
RNA id TU286035
length 2135
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G210749
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39381940 ~ 39468863 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgattaattaatgttGGTGCAaatgcgtttgtgtgtgttttccctTGACCGGCTTTGCCATCCAGTCACATGACTCTTCACACAGGGCTAAATAATGCATTTCTTAAGTGAAATATGTGTAACAAACATTGGTCTCAATAACTgtctaaatgttttttttttaagaagCTTAGGCTATACTTGGTAAAGCAATGTTAATAGCTTAATAGGCATATGCTATGTAAGAACGATTCCCTTTCATGATGGTCTTTGAGACTAATAGCCTAATTTCTCTAATGAATCATAGGCTGTAacatttcaataataataataaatgtaaatagcCTATCGTTTATACCACAGATTATAGTTTGGAATGCAATAATTTACTAATCTTGTTGAAGGATTGTAAAtagcctctctctttttttttttttaccataggCTACAGTTAGAAATGTAACGTTTCAATAATCTTGTTGAAGGATTGTAAAtagcctctctcttttttttttttttaccataggCTATCTTGTTGAATTGCCCATCTTACTTTAAGTTTACCATAGGCTATAATTAAGAACTAACATTTAAATTGTCTTGTTGAAGCGTTGTAAATAGTCCCGTTTTTTAAACCACAGGCTAGTTAGAAACGTAACTTTCAATAGTCTTGTTGAACTATTGTAAATAgcctatttttttcccattggcTAGTTAggaatgttacatttaaataatcttGAAGCATTGTAAATAACCTCTTTTTTATTTACCATAGGCTATAATTAAGAATTATCACTTACATAATTGGTCTTGTTGAACCGTTGTAAACAGCCTCTTTTTAACCATAGGCTAGTTAGGAACGTAACATTTCAGTAATCTTGTTGAAGAATTGTAAATAGCCTCTTTTTTACCATAGTAAATTAATTTCCTAAATGTACCCTATATTCAATAATAGTAATTTCAATAATTAATAGTGCTTTTGGTAAAggatagctatttttttttattgttaagcaCAAGACTTCTAAATtgcttgaataaaaaaataaataaataaataaaaagaagaaagtaGTTATAGGTGTAGCTAGCAGTTAAAGACATAATATCCGGTTATACCAACAGTAACGTTACTGGCTAATTAGCTATTAGGTTACTGGTATTGTAATCTACTGACAGTTTCAATCATTTCTGAAGCACTAGCTAGCGTTAAGTAACTTAGACTATTTTATGCTAGGTCAGACATTGCTAGTTAGACTGACTCTGTAACTGAGGTTAGAAACCAAGTCACCATCTTAAATCTCTaacacgttaaaaaaaaaaaagtatacgtTAATCTGCCCTAGTTTGGGCGTATGCAGCCAAATAAACTagatgaaaaaaaaggaaaaccttCCTCTAGAACTGAATTAGCTTGGCAGAGCTGCTCTCCTATGTTGGACCGAGGCCATTTTTCTTGCCACTTAGTCCGAAGCGCCATTTTGTCTGCTACAGATCTACTGCGCATTTAACTTAGGCCTAGACTAGAAATCTCTCCGACTTCATGAAACatctaacaaaaaataaaaaagtatgcaCTGCAAGTGTTCTGATATCAGCGAGACGTTCTTTCTACGCATACCGAATACACTGTTCAAATCACAATCTACTGCCTCTGCTTTAGCGCGTTGGTCAATGACAAACATGTTTTGCcttgtattttttaagagcTGATATAGGGTAtagtacacaaaaaaaataataaaaaaaagtttgaaaaagtaTTCAAACAAAACAAGAGGTAGATTGTTAGCTACGCTAACTCTTAGTCAAACAAAACGTTTACCCATTAAGGGTAATCTAACTAAGCTAATACTCTCGGACAGCGCCCAAAAATCACGTACTTGTCTTCTGAATAAACGTAGTAGCTATGTGTAAAAAAGGCAAgtttaaatagtaaaaactGCCTCAAAAGAGCTTACATAAAACAGAAATCAAACTAATACCGATACAGCAACCTGGCCCCGATCATCCGCAGAGCTCCCTTCCTACCAGACGCGTCGCCCGAGAGTGTACCGTTGGGCGTTGAACTGCCCCTTTTATGTTCAAGTGATGCGTCACAAAATCCTTCCACGCTGTTGGAAAAACTAGGTCCCCTGAGTCACACTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285817 lncRNA downstream 303068 39140107 ~ 39144431 (-) True G210607
TU285793 lncRNA downstream 365902 39076137 ~ 39081597 (-) True G210590
TU285794 lncRNA downstream 365902 39076137 ~ 39081597 (-) False G210590
TU285779 lncRNA downstream 423831 39022746 ~ 39023668 (-) True G210580
TU285774 lncRNA downstream 461084 38985708 ~ 38986415 (-) True G210576
TU286044 lncRNA upstream 2719 39471582 ~ 39475354 (-) True G210752
TU286062 lncRNA upstream 28876 39497739 ~ 39500933 (-) True G210764
TU286074 lncRNA upstream 34835 39503698 ~ 39504406 (-) True G210772
TU286124 lncRNA upstream 344476 39813339 ~ 39813564 (-) True G210799
TU286125 lncRNA upstream 347761 39816624 ~ 39819903 (-) True G210800
XM_022684073.1 mRNA downstream 504 39436676 ~ 39446995 (-) False LOC103038656
XM_022684072.1 mRNA downstream 504 39436676 ~ 39446995 (-) False LOC103038656
XM_007246382.3 mRNA downstream 3761 39436676 ~ 39443738 (-) True LOC103038656
XM_007246383.3 mRNA downstream 11474 39429829 ~ 39436025 (-) True LOC103038965
XM_007246384.3 mRNA downstream 19403 39402546 ~ 39428096 (-) True LOC103039284
XM_007246379.3 mRNA upstream 6694 39475557 ~ 39479397 (-) True LOC103037815
XM_007246380.3 mRNA upstream 6724 39475587 ~ 39479417 (-) False LOC103037815
XM_007246376.3 mRNA upstream 40204 39509067 ~ 39512932 (-) True ubxn1
XM_022684075.1 mRNA upstream 40204 39509067 ~ 39512298 (-) False ubxn1
XM_007246372.3 mRNA upstream 69336 39538199 ~ 39540530 (-) False LOC103035726
TU285068 other downstream 2736756 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 4697293 34709771 ~ 34750206 (-) False LOC103045435
TU284739 other downstream 4810200 34629587 ~ 34637299 (-) False egf
TU284743 other downstream 4815181 34629587 ~ 34632318 (-) False egf
TU284540 other downstream 5172906 34234918 ~ 34274593 (-) True G209660
TU286079 other upstream 58770 39527633 ~ 39540816 (-) True LOC103035726
TU286109 other upstream 144855 39613718 ~ 39621500 (-) False bend4
XR_002651822.1 other upstream 177491 39646354 ~ 39795941 (-) False atp8a1
TU286210 other upstream 464275 39933138 ~ 39940047 (-) True LOC103023530
TU286446 other upstream 892395 40361258 ~ 40363237 (-) True G210991

Expression Profile