RNA id: XM_007234329.3


Basic Information

Item Value
RNA id XM_007234329.3
length 2949
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC103023530
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39933116 ~ 39940055 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTTGCGGACAGGGCGGAGGATGGTGGAAAGATGGCTACACAGTGCGGAGCAGGCTGACttcatatttcattcatttatttatcagaAATGCGCAGGAATAGCTGTATCCTTGCTTAGCGtagttggACAACACATTTGGAGTCCACAGAGGTTTAATTGACCAGCTATGAAGCTACTTTTTAAACAGATGTGGAGACTACAGTGAGGATGCAGTCTCACAGACTGCGTGttgaggagcagcagcagcagcacccccTGCTGGAGAGGGTTGCTGGTACAGGCTCTTTAAGGGAAGTCACTGCTCGGATATGGTTTATTCAGGATGGCTGTGGAATGGTCTGTGCCTTCATCACCTGGTTCCTGGTGCTTTACGCAGACTTTGTGGTCACCTTTGTTATGCTGCTGCCCTCTAAAAGTGTGGCATATGCTGTGGTCAATGGGGTGATCTTTAATAGTCTGGCAGTCCTGGCACTGACCTCCCACCTGCGCACCATGCTCACTGACCcgGGAGCAATCCCCAAGGGCAATGCCACTAAGGAGTACCTTAACAGCTTGCAGCTGAAACCAGGAGAAACCCTGTACAAGTGCCCAAAATGCTGCAGCATCAAACCAGACAGAGCACATCACTGCAGTATTTGTAAGCGGTGTATTCGTAAGATGGACCACCACTGTCCTTGGGTGAACAACTGCGTGGGAGAAAATAACCAGCGCTTTTTTGTTCTCTTCACAATGTACATAGCCATGATCTCCACACATGCTCTGGTCCTGAGTATGATTCAGTTCTTCACATGCGTCAGGGACGATTGGACTGAATGTAGTGACTTTTCTCCTCCTGTGGCTGTGCTGCTGATAATCTTCCTGTTCTTGGAGGCTATCCTCTTCCTCACCTTCACTGCGGTGATGTTCAGCACACAGATCCAGTCCATTTGCAGTGATGAGATGGTGGCTGAACGTCTGAGGAGTGAGAAGCTTCACAGAGGCAGACGTTGGGAGAGCATGAAGACCGTGTTTGGAGGTCAGCCATCTTTACTCTGGATCAACCCTTTTGCTGGACTCAGACTGAGAAAACTCATCACCTCAAACACACTGAAGGCTGGACCTGAATTTGCTGTCtgacacgaacacacacacacacagacacaccgtGAGCACTAATGTTGCTGCTGGTGAACAGAATGGACCTTCCCCTGCCTCTGGCTGCCTCTGCATCAAGGTTACAGTGAGAAGATGAGAAGTGTACGCTAGCTAAATGTCCAACTGTTTGTGGACACCgcttttaatgaatgcattcagctgcaTTAAGTTGTACCCAGTGTTGACACAGATatacaaatgaacacacacacagcttctctagtccctgtagagaaatattgccaatagaataggactctgtggagcagataaacatgaatctATTGGCAGCTTATGGACATTGGGTTTTAAAGCCgtaagcactgagctgtggagcagtggaaatgTGTTCCCTGGAATGACtgtgctccatccaataattttggaatgagtttgggaGATGGGGGTGTGGAGGGGTGGTGTTCACCCAacagcattctctctctctctcgccctctctctcttttttttttattaatccttGATTTTGGAATGtattccaatacttttgtcaataTAGTGTCTCATATAGGAAGAAATATGAGATATCTTAAGACATTTCTCTGCTCAGCGAAGACCTTTACATCAAGGTCGTTTTTCTTATTGGTTAAAGGCAGAGTTTAGGGGGAAAATGGTTTTGCagtcttttttaaagaaattttttatacatatatatatattgtttttaattattgtaatatttacttttttttgtaattatttattaatattgcaTTTGTTGTGTTGTGCTTTGTTTAGTGTATCTGTGTTGCTAAAATGATGCAAGCTTCAGGGCATTAGACACAACTAAAAGTAAATAGTACCAGGATGTGAATAATAGAGAATCAGTTTTAAACAGAAATTAATTAGATGTTTATCAAAAGTGAGATtgtgtgttcattttttttagggTGAATTTCCAAGCCCttaatttgcacactgtttcTAAGGGTATACCTCACCTCATGTGGTCACAGTCACTGTAAACTACCTCTTAAATCCACATTGTGGTGTGGAACACAGAGTTTCCACACATCCTGGAAAAGCTTTACCAGGTATGCAAAACaccaaggaaaaaaatataaactatgAAACTATGTTCTAGAAATAAACTATATTCTAGTAAGCCTTGGAAAAGTGTTACGCCATTAAACAgcagagattgttgtgttttagCTTATTCTTTCCTCAGCAGGCAGTGCAGGTTCCAGCTGCTTAAACAAATTTTACAGTATATGTTATACGGTATGCTGCAGTGTCAAACTCTATATGGTGATTAAATAAACACCAGCATCTTGCTGCATGTTACGTTAACTTTTACAATCATGTGAAAAAGGGATAACTTCAATTCTAACATAAGTTGTACATTGTAATAAaccaaaatgagagaaaaagctAGGGCACAAAATATTTTCAATTAGACATTTCCTATATCCATCTCTCAGTCTCCAACGTCAACTGGGAGAAAGTTTTTCCCTTTCCTTCATGCAGAATTCAAGTTATGTATTGGTTAAAGGGGTTCCTACACCATCTCAATAGAATTAAGATCTGGGCTTTGACTTATCCATTCCTCCAACTAATGTCTGAGGTTTAAAAAGGCAGCCACTTCTAATTTCCAATCTAATCATGCTGATTCTAATTGTAGACATTTTAAGCAGTAATAAATGTGGGGGTGAACTTTTATTCACAAGAAATTGATATTAATGTTCATTATATGTTCATTACAACTTAGGTTTACAAGTTTGATTTGTTCAGTTATGTAAGCTTTGTTTCTCTATAATGTTCAAATAAAGCCCAAatgtcaatgttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286125 lncRNA downstream 113213 39816624 ~ 39819903 (-) True G210800
TU286127 lncRNA downstream 113213 39816624 ~ 39819903 (-) False G210800
TU286132 lncRNA downstream 113213 39816624 ~ 39819903 (-) False G210800
TU286136 lncRNA downstream 113213 39816624 ~ 39819903 (-) False G210800
TU286124 lncRNA downstream 119552 39813339 ~ 39813564 (-) True G210799
TU286239 lncRNA upstream 95508 40035563 ~ 40036100 (-) True G210873
TU286234 lncRNA upstream 114668 40054723 ~ 40055218 (-) True G210868
TU286362 lncRNA upstream 132330 40072385 ~ 40074768 (-) True G210934
TU286374 lncRNA upstream 166549 40106604 ~ 40108923 (-) True G210937
TU286387 lncRNA upstream 197821 40137876 ~ 40138308 (-) True G210949
XM_007234331.3 mRNA downstream 1437 39928564 ~ 39931679 (-) True LOC103024064
XM_022684135.1 mRNA downstream 6471 39923198 ~ 39926645 (-) True LOC111195796
XM_022684123.1 mRNA downstream 11282 39911444 ~ 39921834 (-) True mlkl
XM_007234332.3 mRNA downstream 25325 39889497 ~ 39907791 (-) True LOC103024376
XM_007234334.3 mRNA downstream 46279 39882684 ~ 39886837 (-) True LOC103024693
XM_007234326.3 mRNA upstream 42739 39982794 ~ 39988361 (-) True pdia3
XM_007234325.3 mRNA upstream 55453 39995508 ~ 40008594 (-) True LOC103022288
XM_022684369.1 mRNA upstream 82482 40022537 ~ 40034090 (-) True LOC103047731
XM_022684133.1 mRNA upstream 136782 40076837 ~ 40097960 (-) True LOC103029855
XM_022684093.1 mRNA upstream 225445 40165500 ~ 40220734 (-) False LOC103046604
XR_002651822.1 other downstream 137175 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 311616 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 392300 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3222373 36710420 ~ 36710743 (-) True G210059
TU284750 other downstream 5182910 34709771 ~ 34750206 (-) False LOC103045435
TU286446 other upstream 421203 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 432750 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 622808 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 1366891 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 2265081 42205136 ~ 42205636 (-) True G211539

Expression Profile