RNA id: TU286446


Basic Information

Item Value
RNA id TU286446
length 1187
RNA type TUCP
GC content 0.42
exon number 2
gene id G210991
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40361258 ~ 40363237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaatacactagTTTAACTTTGTGACAATATCAAACAGTCAAAAATCCTTGTTGTGGTTTTACCATGCAATTAAAAATAGAGCCAAAACTAAATGCAAAAATTGTACGGTGAATGACACACCATATCacaaaggagaaaaaaagtCCAAGTTCAGTCAAATTAGACTGAATCAGACTGGAACACATTTTTGTTGCTTTACAGAAACTCACAAAAAATGCTTCTGTACTAGCACAACAATTTTAATGCAACAGAAGTCTATATTACCAAAcaattattcagttatttatttagtttaccGCTTCAAGTCTTggcttttaatgaaaaaaaaaacaactttgtgAAAAAGGCCTGCAGAGAAAATGATTTGAAAGTAACCGGTTTGACCAACCGAAATGACCAAACTTTATGTTTAAAACTTATCAATTAATCTTTCAATTAAGAAGATTaatttctctctgttcttctcacGTGGAGTATCAAGTGGGGTATTCTTCTCTTCAAGCGTGGCATTCAGGTTCTCCCTGTCTCTCACTAGCGCTGCCTTGTCCCTCTCTAGCGCAGCCCTGTCTTTTTCCAGCCGGGCTCTGTCCTGGTCCAGAGCTGCTCGGTCTCTGTCCACTGCAGCCCTGTCTTTCTCTACCTGTGCCCTGTCTCTCTGCAGAATCATCTTTTCCTTCTCCGCCAGATCCTTTTCTCTCTCCAACATCAGCCTCTCTCTGTCCAGCTCTGTGTGCTCCTTCTCCAGAATCTGACGTTCTCTGCTCAGTTTGATCTTCTCAATATCCAGGCTGGACAGATGTGTAGGCGTCTCATTTCCCAGGAGTCTCTCTTGGTTCAATACAGTCGACCCAGCGTCGGTCACCCCAGATATTCCTTCATCATCCACCAACAGTTCTAAGATGTCGCCTCCTACTTTCACCTGACATATTCTTTTGCTGGCCTGGGGTCCAGAGTCTTCATCACTCACTGATGAAGTCATTGGACGGTAGTTTGTCTCATTCATCTCCTCCTTTAAGGCTTCGTCCAGTGGTTTAAACCATCTCCAGTGGGATGCCTTCGCCACCTCCTCCATGCCAGGTGGAGGAAATTTGATTTCCTTGTACTTCATCTTTAAGTTTTCCCATTTCTTGGCAATCTGGTCAACTGTTACCTTATCTTCCAGCCCCAACTCCCTTAGAATGGCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286401 lncRNA downstream 197708 40163333 ~ 40163550 (-) True G210959
TU286387 lncRNA downstream 222950 40137876 ~ 40138308 (-) True G210949
TU286374 lncRNA downstream 252335 40106604 ~ 40108923 (-) True G210937
TU286362 lncRNA downstream 286490 40072385 ~ 40074768 (-) True G210934
TU286234 lncRNA downstream 306040 40054723 ~ 40055218 (-) True G210868
TU286452 lncRNA upstream 8292 40371529 ~ 40372033 (-) True G210994
TU286461 lncRNA upstream 89005 40452242 ~ 40452572 (-) True G211001
TU286488 lncRNA upstream 136057 40499294 ~ 40500630 (-) True G211025
TU286489 lncRNA upstream 137962 40501199 ~ 40504302 (-) True G211026
TU286494 lncRNA upstream 148399 40511636 ~ 40512067 (-) True G211029
XM_022684118.1 mRNA downstream 5982 40328452 ~ 40355276 (-) False LOC103045095
XM_022684120.1 mRNA downstream 5982 40328452 ~ 40355276 (-) False LOC103045095
XM_022684119.1 mRNA downstream 5982 40328452 ~ 40355276 (-) False LOC103045095
XM_022684116.1 mRNA downstream 5983 40328452 ~ 40355275 (-) False LOC103045095
XM_007238085.3 mRNA downstream 5984 40327839 ~ 40355274 (-) True LOC103045095
XM_007252837.3 mRNA upstream 195447 40558684 ~ 40570148 (-) False LOC103026726
XM_007252836.3 mRNA upstream 195447 40558684 ~ 40570148 (-) False LOC103026726
XM_007252835.3 mRNA upstream 195447 40558684 ~ 40570148 (-) False LOC103026726
XM_007252834.3 mRNA upstream 195447 40558684 ~ 40570148 (-) True LOC103026726
XM_022684137.1 mRNA upstream 195447 40558684 ~ 40569756 (-) False LOC103026726
TU286210 other downstream 421211 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 565317 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 739758 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 820442 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3650515 36710420 ~ 36710743 (-) True G210059
TU286454 other upstream 9568 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 199626 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 943709 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1841899 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 1918892 42282129 ~ 42286999 (-) False LOC103029763

Expression Profile