RNA id: TU286489


Basic Information

Item Value
RNA id TU286489
length 2999
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G211026
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40501199 ~ 40504302 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattgttttacttaaatacaaaaaagtacaacaCGTATACATTAGACAAATTCTTTATAAACTGTTCAGAGGCTTGTTTAACATGAAAacctttgtgtttgtgtgtgtgatcattTCTTCATAGATATCACAGGGCATCTCTACAGGTTACTGATTTTGAGCATCTCTGAGATTTTTACGTccaaccaaattaaaaacatcacaAGGTTATTCTTAACGGTGGCTCcactaaaaagtgattttaatccagggTTAGTCTTTGGCTAGCCACACTTACACAGGTCTGTATGCTATAGACAATCAAATTAAACAGAATAACACTTACATTTTGCCCAACAACGTAGAGCTCACCTATAGCTgctcatttatatgtgcatcaTCTGAAGTGACCACTACTGAAATTCTGGGTCTGCCAGAAAGAGGTTAAAGGCCCAGAGGAAACACTGCAAAATAAAAGTACAACCAAACCCCCTTCATTTCTGCACAGCTATGATTAGTTTTGTACCCTTTCACAGGTCTATTAACAACCATTACAAAAAGACAACGGGCTCATTTTCATGCCCCTAGATTACTCTGGGGATCAAACTAGCCTAAGACAAGCAAAGCTGGACTCAAACCTCTGTAAACATAAAGTAGTTTAAGGACAAGGCAAACAGTAATACGGACATATTTggcaaaaaacaacaataacgtCATCATTCTGTGCTTCTTCTCTAATGTGCTGACTGGATTCCACCCACATGTCATGATTGTGAGGTGACTGATTGTGAAATACATCAATTACTAACAGCTCGATTCTCCACCATCATATAGTAAAccactttgttttcttttagcACAGAATAATCCACACCGGTAAGAGGGCTTAATCAGTGGTTTAACCAAAAATAGCTTAAATGACATTATTAAAATGACAGAGGGAGTGAGACACTGAGaataataatttgattaaatgtGCCAAAACTGTAGCAACAGGGCACTTAAATACACAAGAAATGCTACTCTCATCATATAAAGTGCAGATTACTACAGCATCATGTGACTAATTCAGGTACACAGATTTCAGTAAACTACATCACCTACAGGTGAACACAGgaacagagattttttttcttggcaTCTTAAACAAATCTCTCCAGCATCCCAATCAAAgacctgtttttttatattatttgtttgtgGCAAGAAATTTGAGTCCCATAAAAATTAATAGGACTCCCAGTGGTTCAGCATGGTCTCCTATCTTTAACAACCATGCTGTGGTTTCATTAGTCTTcaaataatatgtaataaaaaaaaataatattaaagcaaAGAATACAATAACCCATCACGAGTTCCGAGGTCCTGTAAGCAATCATACGTTATTTATAGTACTgattgacaacttttatagcaCTTATGTAAGCTTGGATACTTGAGTTATCAAATTTATCAAACCTTTTACACGGATTGTTGAAAGCATAGTTGCTCCAAGCTGCTATTAAAGCGTACCTATGCCAGAAACATTGAACTCTTATGTATTACTGAAAGACGTGAAATGGTTCGAATAAATGACATGCGCAATTATATACACACTAGTAAATCTCCTCAACTCTCAACCCTTCATGATTTCCAGACTTATGAACATTCAGGTGATGGATAAGACCTTGTGGTGCTGTTGTGCTTATTGTATGAAGTCACTTGTACTTTGCAAGAACATGTGACTTCAGAGTGAACACTGTTAACTGAGAAAGGCAATTTTAAACCTAATTCTACAGAAGGCCCAGAGAGTGCACTATGATTAAGgtgaaagtgttaaacacaTTCAAATAAAGCATTATTTAAGAGGTTATAAAGAGAGTATAAAAGGCTGTTGTTTTACATTTCTGCCCATATCTGAAGTGTAGAGAGGACTCAAACATTTCAGTTGACCCCTTAGCATCACTATttataatcctgtttttttcttctgagaatgaaatgttttaaatcaatattcagattgtttcttttatcattaaatacaatcattattttctttaaaatggaaTGTTCTTCAGAAGCTAATCATTTCTGACAAAGATTTAAGCAAGTAATTGTGTAGGTCAGGAACCACTTTTTCTTCCGCTGTCTCTCGGAGCTTCACACATTCGAACTTATAAACAAAGTGGTGACAGAAAGTCCTGAAGCAGTTAATAGTAATAGAAGTAAATCTGATGCCCACATTAACATGAAATGTTCTTGTCCTGTCTAAGTTCAAAAGTCTTATGctaaatgtatatgtattgtTACTGGTACTTGTATTAACCTTAGTATTACTTGGCATGGGATTAAAAAAATGGTGATGCAGCTACTGAAGCAGCTATGCTCTGTGAGAGACATTTTAAGCTATGGTGTTCCACAGGCGTCTTATTTCTCACTACTAAAAGGATTTCCACCACAAGCTGCAGTGTGTCTCCTTTTGCAAGGCTAGACGTGATACGAGACATGAAAAAGACAGGAGgaacaagaaaacaagaaaaggcTGGGTTAAAAGCTATGTGACAAGACTTAGTAAAGAGACACAAATCTAGAAacctacacacttacacacacacgtacaccaGACAAGAATCTTCTCATAATAGGTGAGGAGAACCAGCTCCTGTTCCATAATGGCATTTGAGTGTTAGTCAGCAGTTTGCTACGCAAGTCACAGTAAACGCCAGTGTACAGGTCAAAAGTGTCTCGTCTTTAAAACACCTTTCTAAAAACTCAGCACAGAGAGGATATGGGAGACGGATTCCGTTTTGTTCTGGATGTCCTGGCACGTCCTCTGCTGGAAGAGAGGAAGCGGAAGGAGCTGCTTCTGAACGGACGTCTCCGTTTTCAGCGTGCCACTGGGCAGTTGTGTGCTCCACGTTTCTATGTTTCTGGGTTGGTGACTGTGACTAAGGGAGTGGTGCCGATGATCTTGGTGTACTGGGTGAAGATGGTGTCAAAGGCCTCATCTCGGTGAATCATGGCACCAAACACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286488 lncRNA downstream 569 40499294 ~ 40500630 (-) True G211025
TU286461 lncRNA downstream 48627 40452242 ~ 40452572 (-) True G211001
TU286452 lncRNA downstream 129166 40371529 ~ 40372033 (-) True G210994
TU286401 lncRNA downstream 337649 40163333 ~ 40163550 (-) True G210959
TU286387 lncRNA downstream 362891 40137876 ~ 40138308 (-) True G210949
TU286494 lncRNA upstream 7334 40511636 ~ 40512067 (-) True G211029
XR_002651825.1 lncRNA upstream 30549 40534851 ~ 40544167 (-) True LOC111195797
XR_002651864.1 lncRNA upstream 40471 40544773 ~ 40550272 (-) True LOC111195848
XR_002651862.1 lncRNA upstream 45979 40550281 ~ 40551779 (-) False LOC103026547
XR_002651863.1 lncRNA upstream 45979 40550281 ~ 40551779 (-) True LOC103026547
XM_022684118.1 mRNA downstream 145923 40328452 ~ 40355276 (-) False LOC103045095
XM_022684120.1 mRNA downstream 145923 40328452 ~ 40355276 (-) False LOC103045095
XM_022684119.1 mRNA downstream 145923 40328452 ~ 40355276 (-) False LOC103045095
XM_022684116.1 mRNA downstream 145924 40328452 ~ 40355275 (-) False LOC103045095
XM_007238085.3 mRNA downstream 145925 40327839 ~ 40355274 (-) True LOC103045095
XM_007252837.3 mRNA upstream 54382 40558684 ~ 40570148 (-) False LOC103026726
XM_007252836.3 mRNA upstream 54382 40558684 ~ 40570148 (-) False LOC103026726
XM_007252835.3 mRNA upstream 54382 40558684 ~ 40570148 (-) False LOC103026726
XM_007252834.3 mRNA upstream 54382 40558684 ~ 40570148 (-) True LOC103026726
XM_022684137.1 mRNA upstream 54382 40558684 ~ 40569756 (-) False LOC103026726
TU286454 other downstream 122846 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 137962 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 561152 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 705258 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 879699 39613718 ~ 39621500 (-) False bend4
TU286524 other upstream 58561 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 802644 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1700834 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 1777827 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 2258899 42763201 ~ 42847764 (-) True G211691

Expression Profile