RNA id: XM_007252834.3


Basic Information

Item Value
RNA id XM_007252834.3
length 3888
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC103026726
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40558684 ~ 40570148 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTGCTGAATGGCTACTGTATTCCCTCCTCCTTAGTTCAATGTAAGATGGTGGTGAGAAGCTCCTGTCTAAAGACATATTTAAACTGAAAAGGAACCTGTCGAGCAAGCTATTAAACCCAGAGCTGGACGAGTCAGCGCTGGGAAGTGTGTGCTCAAGAAGTCCGCGCTGTTTAGAGGAACAACTTCCGCCCCAGACCGTGGATATCTGTGGAGTGGAATTCCCTGCATTTGGAAAGCTAAACTTTGCTCAGTGTCCTGTTCTGGGGAACTGCTGTGATCTGAGGCTCTACTGTACCAGTGCAATAGGATGTCCCGTAGTCCCGAACTGAAGGAAGACCCCATGGAGTGCCCTCTGTGCATGGAACCACTTGAGATTGACGATGTCAACTTTTTCCCGTGCACCTGCGGCTACCAAATCTGCCGTTTCTGCTGGCACCGCATCCGGACAGATGAGAATGGCCTCTGCCCAGCCTGCAGAAAGCCATACCCAGAGGACCCGGCTGTGTACAAACCTTTGTCACAGGAGGAGATCCAAAGGATAAAGAAtgagaagaagcagaagcagaatgAGAAGAAGCAAAAGGTGACTGAGAATCGTAAGCACCTTGCCAGTGTCCGTGTGGTCCAGCGGAACCTAGTGTTTGTGGTGGGACTTTCGCAGAGGCTTGCAGACCCGGAGGTACTTAAGAGGCCTGAGTATTTTGGAAAGTTCGGCAAAATACATAAAGTGGTCATCAACAATAGTACGTCGTATGCAGGCTCACAGGGTCCTAGTGCCAGTGCCTATGTTACTTACGTCCGCTCAGAGGATGCCCTAAGAGCAATACAGTGTGTCAACAATGTGGTAGTGGATGGTAGAACACTTAAGgCTTCTTTAGGTACAACAAAGTACTGCAGCTATTTTCTGAAAAGCATGCAGTGCCCCAAGCCAGACTGTATGTATCTACATGAACTGGGAGATGAGGCAGCTAGTTTCACTAAAGAGGAAATGCAGGCTGGGAAACACCAGGAGTACGAGCAAAAACTACTCCAAGATCTTTACAAAATGAATCCCAATTTTCTACAAACTTCAACATGCGGAGGGGAGAAatcaaaaagcaaaacaaatgcTACACAAAGACCAAACAGTAGCAATAAAGAGGGTTGGCCCTTGTTACAGGGCTATGGAAAACTAGTTAACGGTTTACCCACAGAACACCGCAAGTCCCCACCTCTTTTAGACTGCCTAACAGACTCCGATCACTTGACTCCAGATGAACCAGACCCTGAACTGGGAGCAGATCAGAGCACAGGCCTTCCACCCTTTCCCTCAGCCTTAGAGCCAAGCAGtcctGTTGATAAATCAACAGAACCTGTAAGCATAGGGAATGGGGAGAATATACCACAGGTCCCAAGTAGTGACTCACCCTCCCCTCCTCCTGGTCTTTCTAAGCCAAGCCTGGTGGTGCCCATCAGTGTCGCTGACTTAACAGCCCGCTCCCCCTTTGAGGGGGCGGCTGCAGAGTCTCAGTCGCTCTTTTCAGACAACAGTAACTTCAGACACCCCAACCCAATCCCCAGCAGCCTGCCCTCTTTCCCCAGCTCCCCACAGGGGGGCAGTGACTGGCCCATGACCCCTGAGCCACAAAGCCTTTTTGCCTCAGACACCATCCCAGTCGCCTCCTCCACTGACTGGCAAGCAGCCTTCGGTTTTGGCTCTTCGGCCAAGCAGCAGCAACAGGATGATGACCTGGGCTTTGACCCCTTCGACGTGACCAGGAAAGCCCTAGCTGACCTTATCGAGAAGGAGCTGTCTGTTCAGGAGGTTTCACCCTGCTCTCCCACTCTCCCGCTTCACCAGCCCGGCCTCCACAATGGACAGCAGCGCTTCCCTCAGCTGCAGCACAGAGGCCTCTACAACTCCTTCAGTCTGCCCCCACACACAGCCTCGCGCCACCCCTGGATGGGTCTCCCCACCCGCAATAACCTCACACACTTGAACCACGCGGTTAGTGCAGCTGCTGCACACAGCCACTTTCTAGAGGTCAGCGGCCCACCACAGCACCACAACACAGGCCTCGGGGGGATACCTATATCAGAAAACAACTCAGTGGAAAACATAAATGTGAAAGAATGGCAGGACGGCTTAAGAGCACTCCTGCCAAATATCAACATCAACTTCGGAGGCCTCCCAAACTCTacctcctcttcatcctcctcttcgtCCACTTCCAGCGTAAACCACATTGGTGCACCACCTGGGTCGGCAGGGCTCTCACACAGCCTCAGTTGGGATGGCACAGCCAGCTGGATGGATCCCGCCATCATCACCGGTACGACTCACTGGTCCTCCAGAATCTCGGGCAGCAATCGGGAAGAAAGTATCCCTGCGTCCGCAGGTAGCAGTTTGGACTGTCTCCAAGACGACAACCCGCCACACTGGCTCAAGTCTCTGCATGCTCTGACAGAGATGGACGGACCGGGCAGTTCAGTGGCCGCGCCCCAGCCTCAGCACACAGGCCTGCTGGATGCAGCAGCCCAACTTTCGCTGCACAGAGCCGGTTGGGCACCCTACCTTCCCGCTCCCACACTCGCCCCCAGTCAGTTCCACTCTCCACCACCAGGCTTCCAGACAGCCTTTAGACCTCCAGCGCAGACCGCTACAGACATCCTACAGAGCGCCGGCATGGACCGCCACTAGGGACAAGCTCCccttccctccatctctcttaaCTTAACTGTAACGACGCGTGAGGCTGCAGAATATCCTGATCattaataacataacataagCTCTTATACATCTGCCCCGTCTCTTTACCCCCTTTACAACATTCATTTGTCTGACTGTTTCTTTGAGGCACACTCTTTTCGCCTTGTGGTTTATGGAAGGGCACGCAAAGCTGGAATAGTGAGGGTGATATTTTTGATCACCCATACAAAGGTGTCCAACATCTGGTTGAGGACACACATGGCGATCCCTCATGCATAAGGATTTGAGAAATGGTAAGCGTTCAGTGGGCACACATAGATAACAATGATTTATACAAATGGAAGTAAACTGTTGAGGTTTCACTCGCCAAACATCTGTCCATCCTAGGTTCCCATTCTGATCTTATACTGTGAATGTGTTGGTCTAGATAATGACCGCTGTTCCATAAAATACAAGACAAGATAACTGATCATTTCAGAGGAGTCAGTACAGTGCACCGGTGTCTTTGCCTCACAAGTCTATGGTGCAGATCCACACACAAGACTTGATGACACAACAGTGCATGTGTAGAGACCCCTGGTTCCCTGAGGGGGTGCTAAAGGCCCCTTCCCAGCATGGGGGAGTCACTGCTGTACCTCTGTATCAGAGGATGGAGCGCTGCCCCAATGATGGCTAGGGGCTTTAGGTCCTGACTCACATTTAACTCACTAGTAAAAGCGGTCTATGGAGGGTTTGAGATGCCACCATGTGGTACTTAGTCACTCCATTCCTAGTGAGGGAGAAGGATTAAGACTGCACAGCACATTGATCAATCCCACCAGTCTTAAATAAGCATTGGTGATACAATTTTGGGTAGCCAAGGAGGGACTGAGATGGCGATGTAAACAAGGTGGGTTGATAATCACTGTTATTGGTAATGATCAATGTGACAGTAACACAATAACTTCAGGCCTTTTCAAGGCTATatcatttctccttttctttctctctactgtGTGGCCCATACTAAACAGTATTTATCAGACTCTTATTCATTCTTTCAGGAAAAGTCAATATAGTCCAACATTTTGGTTTTAACATGCTGCTGagataacatttaataaaaagtgaagagctaaaagaagaaaaataaaagatttgaCTTTTCTGCAGGTCTGGAACAACAAAATCCTAAATAAAATTGAGTACTCAGTG

Function

GO: NA

KEGG:

id description
K10643 CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651817.1 lncRNA downstream 5989 40551912 ~ 40552695 (-) True LOC111195793
XR_002651862.1 lncRNA downstream 6905 40550281 ~ 40551779 (-) False LOC103026547
XR_002651863.1 lncRNA downstream 6905 40550281 ~ 40551779 (-) True LOC103026547
XR_002651864.1 lncRNA downstream 8412 40544773 ~ 40550272 (-) True LOC111195848
XR_002651825.1 lncRNA downstream 14517 40534851 ~ 40544167 (-) True LOC111195797
TU286573 lncRNA upstream 40949 40611097 ~ 40611720 (-) True G211085
TU286626 lncRNA upstream 59224 40629372 ~ 40717113 (-) True G211119
XR_002651829.1 lncRNA upstream 81517 40651665 ~ 40652046 (-) True LOC111195798
TU286653 lncRNA upstream 145382 40715530 ~ 40718202 (-) True G211140
TU286654 lncRNA upstream 148172 40718320 ~ 40726184 (-) True G211141
XM_022684118.1 mRNA downstream 203408 40328452 ~ 40355276 (-) False LOC103045095
XM_022684120.1 mRNA downstream 203408 40328452 ~ 40355276 (-) False LOC103045095
XM_022684119.1 mRNA downstream 203408 40328452 ~ 40355276 (-) False LOC103045095
XM_022684116.1 mRNA downstream 203409 40328452 ~ 40355275 (-) False LOC103045095
XM_007238085.3 mRNA downstream 203410 40327839 ~ 40355274 (-) True LOC103045095
XM_007252841.3 mRNA upstream 434 40570582 ~ 40582953 (-) True LOC103028575
XM_015606785.2 mRNA upstream 14217 40584365 ~ 40590468 (-) True LOC103027945
XM_007252851.3 mRNA upstream 117644 40687792 ~ 40704331 (-) False dnm1l
XM_007252849.3 mRNA upstream 117644 40687792 ~ 40704331 (-) False dnm1l
XM_007252850.3 mRNA upstream 117644 40687792 ~ 40704331 (-) False dnm1l
TU286454 other downstream 180331 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 195447 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 618637 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 762743 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 937184 39613718 ~ 39621500 (-) False bend4
TU286910 other upstream 736798 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1634988 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 1711981 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 2193053 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 2433257 43003405 ~ 43025465 (-) True G211912

Expression Profile