RNA id: TU286626


Basic Information

Item Value
RNA id TU286626
length 895
lncRNA type read_through
GC content 0.38
exon number 2
gene id G211119
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40629372 ~ 40717113 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATTTGTATACATgtGTATGTTTTTCCAAAACAAATACTAGCTAACAGATAAAGTGCAAATCTAACTAAAAACAGTGACTATTCGAACAGCACAGTGCCGATATTTAGTTAAAATATGGCAGCAGAACACATTTCTATCCACAACAACTGCAGGCCTACAATGTAGGCGAATCAATGAGAGTTGGCTCAGCACTGAAATCACAGTAACTGACACTGGCTGGCAGGTATGTTGAGgtacattttgtatttgttagTGCATAAACTTTAAAAACCTATCTATAATAATGCAGCTGTTGTGCCTCccagtaaaacattgttttgttaaaaacacatggaactatttttttaagacaCAGGCTGGTCTTCTTCAAAGACTAATTCAGaaattaaaactaaacctgCAAGCACACTTTACCACAGAGGAATTATTACAGTTATGCATCAATCTACTGTAATTCTTGTTTGTCTTTCCCAGTACAAAAATATGTGCCTATGTACCCATTGTAAAGTAAATCAGTGACTGTTACCTCATCCAATTTCTGTCAGATTctatgctaatgctatttaGCCACAGTAAAAATGTGTACAGTGTAAATACTTACTTCTTTTCAGTGCATCATAAATCACAAGACACCTTCTACAACGGCCACCTCTATCAACCTTATTAACATCAAGCAATAAATAGCAAGCTTCCCTTCATTAAACCCTTATTTACTTTCCTATGCTGGCATTTCCTACATTGGCTTTTCCCTGATCCTCCACCTTCTTAATAGCTGCCTGAATTTTGGCCTGGTCACCGAGGAGTTCTCGAGGCTTCACAGGGTGAAGATTTTCATCCAACTCCAGAAGAACCGGTATTCCAGTGGGAAGAGTAACATTGACGATGTCGGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286573 lncRNA downstream 17652 40611097 ~ 40611720 (-) True G211085
TU286530 lncRNA downstream 62195 40566889 ~ 40567177 (-) True G211058
XR_002651817.1 lncRNA downstream 76677 40551912 ~ 40552695 (-) True LOC111195793
XR_002651862.1 lncRNA downstream 77593 40550281 ~ 40551779 (-) False LOC103026547
XR_002651863.1 lncRNA downstream 77593 40550281 ~ 40551779 (-) True LOC103026547
TU286654 lncRNA upstream 1207 40718320 ~ 40726184 (-) True G211141
TU286793 lncRNA upstream 173701 40890814 ~ 40911636 (-) True G211242
TU286833 lncRNA upstream 442117 41159230 ~ 41219443 (-) False LOC103035761
TU286977 lncRNA upstream 876259 41593372 ~ 41595965 (-) False LOC103022682
TU287067 lncRNA upstream 1136685 41853798 ~ 41860053 (-) False G211450
XM_015606785.2 mRNA downstream 38904 40584365 ~ 40590468 (-) True LOC103027945
XM_007252841.3 mRNA downstream 46419 40570582 ~ 40582953 (-) True LOC103028575
XM_007252834.3 mRNA downstream 59224 40558684 ~ 40570148 (-) True LOC103026726
XM_007252853.3 mRNA upstream 49940 40767053 ~ 40787591 (-) True LOC103032053
XM_007252854.3 mRNA upstream 49940 40767053 ~ 40786574 (-) False LOC103032053
XM_022684144.1 mRNA upstream 78424 40795537 ~ 40870630 (-) True LOC103031733
XM_007252857.3 mRNA upstream 174418 40891531 ~ 40896561 (-) True adal
XM_007252858.2 mRNA upstream 179779 40896892 ~ 40902164 (-) True LOC103033419
TU286524 other downstream 65544 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 251019 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 266135 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 689325 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 833431 39646354 ~ 39795941 (-) False atp8a1
TU286910 other upstream 589833 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1488023 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 1565016 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 2046088 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 2286292 43003405 ~ 43025465 (-) True G211912

Expression Profile