RNA id: TU286977


Basic Information

Item Value
RNA id TU286977
length 1037
lncRNA type sense_over
GC content 0.42
exon number 5
gene id LOC103022682
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41593331 ~ 41600623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTGGGAGGACTTTTATTTGCAGGTTTCCCgccaaattttatttattttttttaacacaatgaGTTGTCTGTTTGGACTAGCATCATTCATGGTTGTTTTGTTGGCAGGTATAGGCTTTTATGGCTGTTTGTTCATATAGGATAGAAGGAAATGAAATTTGCCTTTAAATTGGATCAGGTTGAAATTGATGAGTAAGTAGGCATTATTTGATCTGGTTAAAATGGATTTTGGATTGTTTGCGttcttggtgttttttttagtgggTGTGATCAGTAATCACACTTTggtgcaaactaaaacaaacacagGTTTTACTTTCCTCCTGTTTCTGGTTAAACTTTAAAGCCATGACCTTAGTGGCTAGTACGTCTTGGATATTGTGGGCTGAATCACACAGTTTAGGATTGGTAAACACCCAACGGCTCCTGCTCTCATGTCCTCCTCTTTGTCACGGTGGAGTGTACAGACCCAGTGAGTGGCGTGAGCACTCGAGGTGTGCTGACCCTGTGTGAGCTGGCCGGCTCAGAGCGCATCTCTAAAACACAAGCCACTGGCCAGCGGCTCACAGAAACGGCAGCCATCAACAAGTCTTTGATGGTCCTGGGACAGgTGTTTGGGGCTCTGAGGTCTAACTCTCTTCATGTGCCTTTCCGGAATTCTAAACTCACTCACGTGCTCCAGCCCTGTCTCAGTGGTGATGCTAAGATGTGTGTAATTGTGCACGTTAGTCCAGATGTGGAAGACGCTGCAGAGACTCTGAACACTCTTACGTTTGGAACGTCCATTCGACAGATCACTCTGGGCAAACCGCCACAGAACAGAACTCAGATAAAGACCACTAAGGCTGAGAAGTAACTTGATGAGAAATGAGTGAATAGCTCTATATTGACCCAGCCTTCCCagagtttggtttgatttccATTACGGGAATTTTctattgtatataatataatgtatattgtcaCTATCGCACAAAAaacttttgtttatatattttgctgtttttgatcTTTACACATTGGACTTGAGGAAag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286833 lncRNA downstream 373929 41159230 ~ 41219443 (-) False LOC103035761
TU286793 lncRNA downstream 681736 40890814 ~ 40911636 (-) True G211242
TU286654 lncRNA downstream 867188 40718320 ~ 40726184 (-) True G211141
TU286653 lncRNA downstream 875170 40715530 ~ 40718202 (-) True G211140
TU286626 lncRNA downstream 876259 40629372 ~ 40717113 (-) True G211119
TU287067 lncRNA upstream 257833 41853798 ~ 41860053 (-) False G211450
TU287065 lncRNA upstream 262898 41858863 ~ 41865986 (-) True G211450
TU287068 lncRNA upstream 262898 41858863 ~ 41860053 (-) False G211450
TU287066 lncRNA upstream 264294 41860259 ~ 41865986 (-) False G211450
TU287064 lncRNA upstream 270795 41866760 ~ 41872555 (-) True G211449
XM_007252879.3 mRNA downstream 14858 41473353 ~ 41578514 (-) False dock4
XM_007252878.3 mRNA downstream 14858 41473353 ~ 41578514 (-) True dock4
XM_022684172.1 mRNA downstream 55631 41473353 ~ 41537741 (-) False dock4
XM_022684174.1 mRNA downstream 121423 41324957 ~ 41471949 (-) True immp2l
XM_022684176.1 mRNA downstream 121423 41418913 ~ 41471949 (-) False immp2l
XM_022684173.1 mRNA upstream 5141 41601106 ~ 41606198 (-) True LOC111195800
XM_007252884.3 mRNA upstream 12112 41608077 ~ 41615191 (-) True tmem168
XM_007252883.3 mRNA upstream 20588 41616553 ~ 41625200 (-) True bmt2
XM_015606777.2 mRNA upstream 31858 41627823 ~ 41633902 (-) True LOC103022995
XM_015606783.2 mRNA upstream 41370 41637335 ~ 41652545 (-) False LOC103043124
TU286910 other downstream 282637 41306946 ~ 41310735 (-) True LOC103037199
TU286524 other downstream 1029544 40562863 ~ 40563828 (-) False LOC103026726
TU286454 other downstream 1215019 40372805 ~ 40378353 (-) True G210995
TU286446 other downstream 1230135 40361258 ~ 40363237 (-) True G210991
TU286210 other downstream 1653325 39933138 ~ 39940047 (-) True LOC103023530
TU287190 other upstream 609171 42205136 ~ 42205636 (-) True G211539
TU287223 other upstream 686164 42282129 ~ 42286999 (-) False LOC103029763
TU287421 other upstream 1167236 42763201 ~ 42847764 (-) True G211691
TU287708 other upstream 1407440 43003405 ~ 43025465 (-) True G211912
TU287749 other upstream 1493057 43089022 ~ 43106949 (-) False LOC103021577

Expression Profile