RNA id: XM_007228359.3


Basic Information

Item Value
RNA id XM_007228359.3
length 1547
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC103030564
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 22389756 ~ 22392072 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacaaatacAGAAAAGTGAATTGCACTGACTCAAATTGCTCATGTAAACTCTTCCACACACTTTTCCGATGACATAATTCACAACATTGCATCAGAGCCAGAGGAGTTACGTCAGCCTGGTCACAGCCTCTGGGAGATGGGAGATAGCCAATTACAGACCACTTCTGTTTCAGTCTGCAAATAAGAactttggactttttttttcacccaaataaatacaGTCCCACTGGGATTCCACGACTTATTGTAAGCAAACTCTCACCCAGGCTGACCATGCTCTCAAGGCTACTCCTCTGCTGGGTTGTTCTTAGACTCCACGCTCCATGCACATGCTTCCCTCTACAGCAGGAACCCTCACCTGATGATGTCCTGGCAGAGGACCTTGAAGAACACAGGCAAGCAGAGGAAGAAGCTTCAACAAACTATTTAAAGAGGAAAAATGTGAATGAAAGAGCTCAGAGAATCACTCACCAAGAATCTAAAGGAATCATCACACACTTGAAAAACCCAACTAAAGGCTGCTTCTCAGTTCTGAATGTGAAGAGTAACAAGTTCTTGTGCTTGGATTCAGAAAGAAAGCTGTACACTTCGGAGGATGACAGCAATGAGGACTGCTGGTTTCATCGCATCAATAGACATAAACATTACCGTGTGTTTCAGTCCTGCACTGGAGATGTGATGATCATTCTCAATCAGAAGAACGCCAGCGTTCACACACTTGATTCATCAGAGCTCTCTAGCTTCATCTCCattaaaagacacaaaaaacGCACAAACCGCAGAAAAAGACGCAGCTGGCACATCGATCCGTCCGATCCTTTAGGATCCGAGTACCCGTATCAGAAAACAATCAACAGCCAGAAAAGAGAACCTGAGTACAGCAGCAACATTTTCAAGGAGACCATTGCTTTGGTTGATGATCCACTGCAGGTGCTGCTTCCACACAGCCCACTCAGCCCAACACTGGAAAAGAACTGGAGAAACAAAAAGTTCAGATTCTGAGAGGACTGTCAGCATGTGTCAGATCATGTGTCAGTGTAGAATTTTCTCACTCTGCTGTCGATGTTTCACACTTAATCACCCTTCTCACTCCTGTAGGTGAGGTGAGGCTCTATTTGCCCTTTCACCTAATTTAATGAGTTAACATTTAAACACCAGAATTTCACATTTCCACAGTGTAGCTCTTTTAATAAGGTCAGTGATCATGCAATATTACATGATTAAAAAACTAAAGTCTGTTTCTTGGAATTGAAGCACTAGTCTTCAAAAGTACTTAGAAAAGATTGATGTTATGTTACATTTTGTTGAGAAATATACttctcttttaaactctttttattcCACAATGATCACCTCGTAACCATatgttcttcttcttattattatatgtatatttaatggTGCCGGACACCCACTTAATGTCacttatttatttgtctttatatatttttgttatttatgacatttatactttatactgaTTACTACTTTATACTGAATGCTGTCAATTGCATACAACAATGATTGtgttatttgtaatatttaag

Function

GO: NA

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281250 lncRNA downstream 12118 22377120 ~ 22377638 (-) True G207275
TU281239 lncRNA downstream 13069 22326902 ~ 22376687 (-) False G207269
TU281241 lncRNA downstream 13069 22372340 ~ 22376687 (-) False G207269
TU281242 lncRNA downstream 13069 22373511 ~ 22376687 (-) True G207269
TU281162 lncRNA downstream 142643 21764325 ~ 22247113 (-) False LOC103034681
TU281258 lncRNA upstream 10301 22402373 ~ 22402783 (-) True G207282
TU281246 lncRNA upstream 12208 22404280 ~ 22406529 (-) True G207272
TU281247 lncRNA upstream 12511 22404583 ~ 22406529 (-) False G207272
TU281296 lncRNA upstream 190694 22582766 ~ 22583801 (-) True G207315
TU281316 lncRNA upstream 296668 22688740 ~ 22689592 (-) True G207333
XM_007228362.3 mRNA downstream 269619 22082541 ~ 22120137 (-) True kdm7a
XM_022683776.1 mRNA downstream 313717 22053224 ~ 22076039 (-) False cnot1
XM_022683775.1 mRNA downstream 313717 22053224 ~ 22076039 (-) False cnot1
XM_015601677.2 mRNA downstream 313717 22053224 ~ 22076039 (-) False cnot1
XM_022683773.1 mRNA downstream 313717 22053224 ~ 22076039 (-) False cnot1
XM_007228463.2 mRNA upstream 1968 22394040 ~ 22400515 (-) True fgf6
XM_022683780.1 mRNA upstream 15320 22407392 ~ 22452031 (-) False LOC103030249
XM_022683781.1 mRNA upstream 15320 22407392 ~ 22452031 (-) True LOC103030249
XM_022683779.1 mRNA upstream 15320 22407392 ~ 22435146 (-) False LOC103030249
XM_007228357.3 mRNA upstream 67974 22460046 ~ 22477263 (-) True c24h12orf4
TU280694 other downstream 1877612 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other downstream 1877612 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other downstream 1877612 20463703 ~ 20512144 (-) False LOC103040850
TU280287 other downstream 3550840 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 4347843 18039706 ~ 18041913 (-) False LOC111195732
XR_002651782.1 other upstream 517972 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 518601 22910673 ~ 22956024 (-) False LOC103035944
XR_002651783.1 other upstream 832533 23224605 ~ 23225055 (-) True LOC111195748
XR_452612.3 other upstream 1546853 23938925 ~ 24020314 (-) False dnajc24
XR_002651784.1 other upstream 1564274 23956346 ~ 24020314 (-) False dnajc24

Expression Profile