RNA id: XM_007228400.3


Basic Information

Item Value
RNA id XM_007228400.3
length 1589
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC103043510
representative False

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20123147 ~ 20141059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCATAGAGCGGCAGCAGCTCAGTGAGCATCACTGACAGGAGGAGGATGGGAGTCTGAGGAGCTGAGGATCTTTCACACAGCAGCAGAACTTCTCATATCTCTAAACTTCACATATTTATCCTGACCAAACATCTCTGAaccagaaaacacagagaaacagctgGAATAAACAAGGAATtaacagaagaacacacacagagagagagagagagagggagctgtgaagagaggagagagagagagctgggcTCGTCTGCAGAGTGAAGGTTGGGCTGTGGAGTTTCAGCAGGGCTGAGAGTTTTCTTCACCCCTTCAGTAAAGGATGAAGCCAGTGGGGTTGATGGTCCTGCTGGTGGTGCTGATGGCAGGATGCTCCGCTGCTTTGCGTTTCAGCCGAGACTCCACCCAGGTCAACCTCAACGATGCGTCCAATCGGGAGGTAGAGGCTACGGGATTCAACGCCTCCAGCAATGAGCGTCCTGTGCTGAGGAACTCTCCCCGATTACCTCCCCCACCCATGTGCACCAAGCCCACCGAGATCAAGGAGACGTTCAAGTACGTCAACACCGTCATATCCTGCCTGATTTTTGTGGTGGGAATCATCGGGAACTCCACTTTGTTGAGAATCATCTACAAGAACAAGTGCATGAGGAACGGCCCTAACGTGCTGATCGGAAGTCTGGCTTTGGGTGATCTGTTCTACATCCTCTTCGCCCTCCCCATCAATGTCTTTAAGTTACTGGCAGAAGACTGGCCATTCGGCGTGCACATCTGCAAGCTGATGCCGTTTGTGCAGAAGGCGTCAGTGGGAATCACAGTTCTCAGCCTGTGTGCCCTCAGCATCGACAGATATCACGCTGTGACCTCCTGGAGCCGAGTGAAGGGGATGGGGATTCCGTTATGGAAGGTTCTGGAAGTGACGCTGATCTGGCTGGTGTCGGTAGTGCTAGCCGTGCCTGAGGCTTTAGCCTACGACATGATGGAGATCACCTACAGAGGGAAGAAGCTGCAGGTGTGTCTCCTACATCCTCAGCAGagcacacagttcctgcagATCTATCAGGATGTGAAGGACTGGTGGCTGTTTgggttttatttctgtttgccCCTGGCGTGTACCGTGGTCTTCTACACCCTCATGTCCTGTGAAATGCTGAACCGGAAGAAAGGAATGCGCATTGCCCTCAATGATCATATGAAGCAGcGCAGAGAAGTAGCTAAAACAGTCTTCTGCCTGGTGGTGATCTTCGCGCTCTGCTGGCTGCCTCTTCACCTCAGCCGCATTCTGAAAAGGACAATCTACGATCCAAACGACCCGGACCGCTGCGAGCTCCTCAGTTTCCTGCTTGTGATGAATTACATCGGCATCAACATGGCCTCCCTCAACTCCTGCATCAACCCTGTCGCACTGTACTTCGTCAGCCAGAAGTTCAAAAACTGTTTCAAGTCGTGTCTGTGCTGCTGGTGCCAGAGGAACATCACTCCGATTGATGAGCGGGGTTCGGGGATACGCTGGAAGGGCTCAGACCACGGAAACGGGCTGGACCGGTCCAGTTCACGCTCCAGTCAGAAATACAGCTCCTCCTAA

Function

GO:

id name namespace
GO:0086100 endothelin receptor signaling pathway biological_process
GO:0048484 enteric nervous system development biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0042310 vasoconstriction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280575 lncRNA downstream 39187 20086177 ~ 20086493 (-) True G206784
TU280571 lncRNA downstream 50990 20074425 ~ 20074690 (-) True G206782
TU280560 lncRNA downstream 130878 19925031 ~ 19994802 (-) False LOC103046671
TU280552 lncRNA downstream 157958 19957477 ~ 19967722 (-) False LOC103046056
TU280559 lncRNA downstream 174573 19925031 ~ 19951107 (-) True LOC103046671
TU280583 lncRNA upstream 48978 20190037 ~ 20193718 (-) False LOC103040644
TU280584 lncRNA upstream 48978 20190037 ~ 20274905 (-) False LOC103040644
TU280585 lncRNA upstream 48978 20190037 ~ 20196861 (-) False LOC103040644
TU280587 lncRNA upstream 48978 20190037 ~ 20193718 (-) False LOC103040644
TU280668 lncRNA upstream 223855 20364914 ~ 20372471 (-) True G206843
XM_007228404.3 mRNA downstream 20840 20099499 ~ 20104840 (-) True vamp7
XM_007228405.3 mRNA downstream 41220 20077520 ~ 20084460 (-) True LOC103045046
XM_007228407.3 mRNA downstream 147822 19968907 ~ 19977858 (-) True prps1
XM_022683727.1 mRNA downstream 149024 19968907 ~ 19976656 (-) False prps1
XM_007228408.2 mRNA downstream 157649 19964254 ~ 19968031 (-) True LOC103046056
XM_022683731.1 mRNA upstream 39251 20180310 ~ 20188753 (-) True LOC103043211
XM_022683733.1 mRNA upstream 55580 20196639 ~ 20238734 (-) False LOC103040644
XM_022683732.1 mRNA upstream 55580 20196639 ~ 20238734 (-) True LOC103040644
XM_007228398.2 mRNA upstream 98808 20239867 ~ 20244489 (-) True cysltr1
XM_022683735.1 mRNA upstream 231827 20372886 ~ 20382010 (-) True itm2a
TU280287 other downstream 1286764 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 2083767 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 2824723 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3494629 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3496113 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 322644 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 322644 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 322644 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2768985 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2769614 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile