RNA id: XM_007228407.3


Basic Information

Item Value
RNA id XM_007228407.3
length 1938
RNA type mRNA
GC content 0.49
exon number 7
gene id prps1
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19968907 ~ 19977858 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATAGGCCTCGTGTAGGCCACGCGGCGCATGTTGACATTCGCCCTGCGAGTGACGAGGTTGACGTCAGTACGACGGGCTGGCGTGTGATCTCGCGCGCCATCGGGAGACTCGTGAGACCAACTATGGCGGAGAGGTAGGGAGGACGTTCACCTGACCGGGGGATTCAGCATCGGGCTGCAGAGCTTCATAAACACCGCCGAGCTCCTCGCGCTCCAACGGAGGCTGCTTTTAGAGCACACGCCGTTTTTGCGCACATCGTCCTTCGTCACGCGCGGCGCGAGGCTCCGGAACGCGGGAAAAGATGCCCAACATTAAGATCTTCAGCGGGAGCTCCCATCAGGACCTGTCCCAGAAGATCGCGGACCGCCTCGGGCTCGAGCTCGGGAAGGTGGTCACCAAGAAGTTCAGCAATCAGGAAACGTGTGTGGAGATTGGAGAGAGCGTCCGGGGCGAGGACGTGTACATCGTACAGAGCGGCTGTGGAGAGATCAATGACAACCTGATGGAACTTTTGATTATGATAAACGCCTGTAAGATAGCCTCCGCCTCCCGCGTCACTGCCGTCATCCCCTGTTTCCCTTACGCTCGCCAAGACAAAAAGGACAAGAGTCGAGCGCCCATCTCCGCCAAGCTGGTCGCCAACATGCTGTCGGTCTCCGGTGCAGATCATATCATAACCATGGACCTGCATGCCTCTCAGATACAGGGTTTCTTTGACATTCCTGTGGACAACCTGTATGCAGAGCCTGCTGTGCTGAAGTGGATCAAGGAGAACATCCCTGAATGGAAGACCTGCACTATTGTTTCACCAGACGCTGGAGGAGCAAAGAGGGTCACTTCCATAGCAGACAGACTGAATGTTGACTTTGCCCTCATTCACAAAGAGAGGAAAAAGGCTAATGAGGTGGATCGCATGGTCTTGGTGGGAGATGTGAAAGACCGCGTGGCCATCTTGGTTGATGACATGGCTGACACGTGTGGCACCGTCTGCCACGCAGCCGACAAACTGATATCAGCAGGAGCCACCAAGGTTTACGCCATCCTTACCCATGGCATCTTCTCGGGTCCTGCCATATCACGCATCAACAATGCATGCTTTGAGGCTGTAGTTGTGACGAACACCATTCCACAGGAGGAGAAGATGAAGCATTGTCCTAAAATACAGGTCATTGATATTTCCATGATTCTGGCTGAAGCTATTCGTCGGACCCACAACGGTGAATCTGTCTCTTATCTCTTCAGCCATGTTCCCTTGTAACCTTGCCTTCTCGGTGCTTATCTATTTGCTGTGTTACCAAAAAAGAAGTGGGAGCCCGACCCCAAAATCCTCAGCAGCTGTGTCCTGCTGCACCCTCACTTTATCCAGAAGGGAATCGACCTCCAGTGAAATCACAGCGCCGGCCACGTCCCGCCACCAGTTCAGGATCCCAGCAAGACTTTCTAAATTCTTTCAGTCGAGGCTGAAACTCCGGACTATAAATTCAGATCCGTCTCACATTCAGATTGACTTGTTACAGTTTAATTTATTGGAGCTTAATGTGTATCagtgacaaaaaacaaacaaaaaggagGAGATCTTTGAGTGGAATTGATCCCGGCAGCCTGTTTGAAGAATGTTTGTACCTGtggataaaatgtatttttttggttccttAGGCGTAGATTTTAGTCGATGCTGGGATTGTAGCTCGGGGTCTCTGCAGGCTGGAGCTTCCTTGACAGAgtctgttttgctgttttcatttcttttcttttttttttttttttttttttaagaaatttgtatgacttctattttttttttcctgaaacgATTCAGTCACACTTTTCTTAGAATCCATCTTTTATATAtgttgattttctttgattggATAAGTCATGTCAGATGACCTGATGAAATGTGTTCTTATTAAAGAGTTGAGACAACGAGCAAGAAA

Function

GO:

id name namespace
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00948 PRPS, prsA; ribose-phosphate pyrophosphokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280552 lncRNA downstream 1185 19957477 ~ 19967722 (-) False LOC103046056
TU280559 lncRNA downstream 17800 19925031 ~ 19951107 (-) True LOC103046671
TU280546 lncRNA downstream 116946 19814974 ~ 19851961 (-) True G206763
TU280436 lncRNA downstream 287697 19601599 ~ 19681210 (-) True G206685
TU280403 lncRNA downstream 402363 19566212 ~ 19566544 (-) True G206653
TU280571 lncRNA upstream 96567 20074425 ~ 20074690 (-) True G206782
TU280575 lncRNA upstream 108319 20086177 ~ 20086493 (-) True G206784
TU280586 lncRNA upstream 129239 20107097 ~ 20193718 (-) False LOC103040644
TU280583 lncRNA upstream 212179 20190037 ~ 20193718 (-) False LOC103040644
TU280584 lncRNA upstream 212179 20190037 ~ 20274905 (-) False LOC103040644
XM_007228408.2 mRNA downstream 876 19964254 ~ 19968031 (-) True LOC103046056
XM_007228409.3 mRNA downstream 13328 19952166 ~ 19955579 (-) True LOC103046360
XM_015601829.2 mRNA downstream 17790 19942842 ~ 19951117 (-) False LOC103046671
XM_007228413.3 mRNA downstream 35921 19914549 ~ 19932986 (-) False LOC103047376
XM_007228405.3 mRNA upstream 99662 20077520 ~ 20084460 (-) True LOC103045046
XM_007228404.3 mRNA upstream 121641 20099499 ~ 20104840 (-) True vamp7
XM_022683730.1 mRNA upstream 145289 20123147 ~ 20134840 (-) True LOC103043510
XM_007228400.3 mRNA upstream 147822 20125680 ~ 20141059 (-) False LOC103043510
XM_022683731.1 mRNA upstream 202452 20180310 ~ 20188753 (-) True LOC103043211
TU280287 other downstream 1129991 18838369 ~ 18838916 (-) True G206575
TU279905 other downstream 1926994 18039706 ~ 18041913 (-) False LOC111195732
TU279578 other downstream 2667950 17271247 ~ 17300957 (-) False LOC103041988
trnav-uac_4 other downstream 3337856 16630979 ~ 16631051 (-) True trnav-uac_4
trnav-aac_55 other downstream 3339340 16629501 ~ 16629567 (-) True trnav-aac_55
TU280694 other upstream 485845 20463703 ~ 20512144 (-) False LOC103040850
TU280695 other upstream 485845 20463703 ~ 20512144 (-) False LOC103040850
TU280696 other upstream 485845 20463703 ~ 20512144 (-) False LOC103040850
XR_002651782.1 other upstream 2932186 22910044 ~ 22956024 (-) False LOC103035944
XR_002651781.1 other upstream 2932815 22910673 ~ 22956024 (-) False LOC103035944

Expression Profile